Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99488 * 2 1 4 4 H 1.48501 * 109.47103 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47298 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47350 * 150.00162 * 3 2 1 7 7 C 1.37872 * 120.00468 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99820 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46939 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47392 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00584 * 179.97438 * 11 10 9 13 13 C 1.38649 * 119.94804 * 359.91904 * 12 11 10 14 14 C 1.38112 * 119.87639 * 180.02562 * 13 12 11 15 15 C 1.38182 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.38496 * 120.32836 * 0.02803 * 15 14 13 17 17 C 1.38162 * 119.88967 * 359.97438 * 16 15 14 18 18 C 1.51360 * 109.78342 * 179.97438 * 17 16 15 19 19 C 1.54354 * 105.24989 * 342.77396 * 18 17 16 20 20 C 1.51385 * 130.35939 * 179.97438 * 16 15 14 21 21 H 1.08997 * 110.30030 * 316.11518 * 20 16 15 22 22 N 1.46903 * 110.30383 * 78.16620 * 20 16 15 23 23 H 0.96995 * 120.00729 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47344 * 60.00185 * 9 7 2 25 25 H 1.09003 * 109.47334 * 299.99967 * 9 7 2 26 26 H 1.09003 * 109.46946 * 59.99948 * 10 9 7 27 27 H 1.09003 * 109.47086 * 300.00126 * 10 9 7 28 28 H 1.08005 * 120.06323 * 0.03792 * 13 12 11 29 29 H 1.07998 * 120.00688 * 179.97438 * 14 13 12 30 30 H 1.07997 * 119.83458 * 180.02562 * 15 14 13 31 31 H 1.09002 * 110.30579 * 101.74658 * 18 17 16 32 32 H 1.08997 * 110.30469 * 223.80473 * 18 17 16 33 33 H 1.08997 * 110.82225 * 144.60994 * 19 18 17 34 34 H 1.08996 * 110.82468 * 268.16348 * 19 18 17 35 35 H 1.00897 * 110.99712 * 298.54817 * 22 20 16 36 36 H 1.00903 * 110.99913 * 62.50601 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 6 4.0217 -2.6362 -0.0010 11 8 5.4507 -2.6362 -0.0021 12 6 6.0678 -3.8470 -0.0017 13 6 5.3118 -5.0092 0.0016 14 6 5.9405 -6.2389 0.0026 15 6 7.3205 -6.3092 0.0010 16 6 8.0798 -5.1509 -0.0012 17 6 7.4554 -3.9184 -0.0022 18 6 8.4944 -2.8178 -0.0038 19 6 9.8077 -3.4985 0.4372 20 6 9.5820 -4.9634 -0.0028 21 1 10.0491 -5.6468 0.7063 22 7 10.1216 -5.1823 -1.3514 23 1 -0.4851 0.8399 0.0004 24 1 3.8752 -0.6801 0.8889 25 1 3.8746 -0.6797 -0.8911 26 1 3.6580 -3.1503 -0.8907 27 1 3.6587 -3.1499 0.8893 28 1 4.2332 -4.9530 0.0031 29 1 5.3537 -7.1456 0.0056 30 1 7.8095 -7.2722 0.0014 31 1 8.6022 -2.4009 -1.0052 32 1 8.2179 -2.0355 0.7031 33 1 10.6624 -3.0640 -0.0812 34 1 9.9342 -3.4328 1.5178 35 1 9.9397 -6.1239 -1.6652 36 1 9.7519 -4.5062 -2.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062798618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -47.018751 kcal Electronic energy + Delta-G solvation = -17356.095616 eV Core-core repulsion = 14610.658200 eV Total energy + Delta-G solvation = -2745.437417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60740 -39.56769 -36.79167 -35.44529 -33.48595 -32.65165 -30.60748 -29.80599 -27.19599 -26.72024 -23.54312 -23.00591 -21.65632 -21.22813 -19.29278 -18.30749 -17.49823 -17.08677 -16.78975 -16.44816 -16.31319 -15.53190 -15.21946 -15.05520 -14.59581 -14.46192 -14.21305 -13.85873 -13.35566 -13.28113 -12.78285 -12.56340 -12.43447 -12.31803 -12.04395 -11.95063 -11.80950 -11.78947 -11.60936 -11.46938 -10.84880 -9.99929 -9.50241 -9.09792 -8.38165 -6.45437 0.26136 0.44448 1.33588 1.35089 1.47774 2.30391 2.30981 2.70263 2.96766 3.38493 3.55141 3.82665 3.98843 4.00148 4.14631 4.16096 4.22591 4.30142 4.37043 4.55079 4.60891 4.77458 4.83583 4.87875 5.04085 5.08303 5.16212 5.25003 5.25163 5.38260 5.43786 5.49303 5.53566 5.85553 6.12455 6.16042 6.46833 6.53128 6.60060 7.20069 8.77656 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035466 B = 0.004757 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.298505 B = 5884.716018 C = 6534.865076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.539 4.539 8 H 0.041 0.959 9 C -0.004 4.004 10 C 0.087 3.913 11 O -0.334 6.334 12 C 0.114 3.886 13 C -0.222 4.222 14 C -0.083 4.083 15 C -0.141 4.141 16 C -0.105 4.105 17 C -0.146 4.146 18 C -0.078 4.078 19 C -0.107 4.107 20 C 0.137 3.863 21 H 0.104 0.896 22 N -0.829 5.829 23 H 0.271 0.729 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.125 0.875 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.350 0.650 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.818 -11.328 -0.455 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.577 4.577 8 H 0.059 0.941 9 C -0.041 4.041 10 C 0.012 3.988 11 O -0.248 6.248 12 C 0.069 3.931 13 C -0.241 4.241 14 C -0.101 4.101 15 C -0.159 4.159 16 C -0.107 4.107 17 C -0.147 4.147 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.026 3.974 21 H 0.122 0.878 22 N -0.356 5.356 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.486 -10.872 -0.135 24.080 hybrid contribution -2.071 0.503 -0.283 2.150 sum 19.415 -10.369 -0.417 22.014 Atomic orbital electron populations 1.70017 1.08105 1.28593 1.51414 1.25868 0.95615 1.03288 0.93528 0.85680 0.79393 0.78299 0.79475 1.18860 1.20284 1.17536 1.21105 0.90490 0.93920 1.52192 0.94061 1.19421 0.94392 0.92599 0.97732 1.22651 0.76095 0.99581 1.00431 1.86040 1.22555 1.27863 1.88328 1.19171 0.91903 0.84786 0.97245 1.21431 1.00430 0.93009 1.09259 1.21163 0.95074 0.96888 0.97005 1.20836 0.93075 0.98404 1.03603 1.21698 0.98676 0.91987 0.98329 1.20178 0.90133 0.98106 1.06277 1.20989 0.92648 0.95820 1.02060 1.22421 0.96460 0.93414 1.02186 1.20985 0.85541 0.98172 0.92727 0.87808 1.59163 1.63889 1.09483 1.03107 0.92010 0.95502 0.95569 0.92639 0.92667 0.85741 0.83218 0.83311 0.90484 0.91700 0.88379 0.89629 0.83675 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.02 0.90 5.47 84.65 0.46 1.36 16 3 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.54 -31.25 9.66 25.60 0.25 -31.00 16 8 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 9 C 0.00 -0.19 4.41 29.85 0.13 -0.06 16 10 C 0.09 3.70 4.68 71.98 0.34 4.04 16 11 O -0.33 -13.36 10.08 -92.43 -0.93 -14.29 16 12 C 0.11 3.92 6.69 22.54 0.15 4.07 16 13 C -0.22 -6.85 9.03 22.34 0.20 -6.65 16 14 C -0.08 -1.98 10.04 22.23 0.22 -1.76 16 15 C -0.14 -2.91 10.04 22.32 0.22 -2.69 16 16 C -0.10 -2.34 5.74 -19.60 -0.11 -2.46 16 17 C -0.15 -4.15 6.11 -19.50 -0.12 -4.27 16 18 C -0.08 -1.88 6.70 30.52 0.20 -1.67 16 19 C -0.11 -1.87 6.73 31.60 0.21 -1.66 16 20 C 0.14 2.33 4.01 44.94 0.18 2.51 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 N -0.83 -12.40 9.30 -168.59 -1.57 -13.97 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 25 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 26 H 0.06 2.31 7.66 -2.39 -0.02 2.29 16 27 H 0.06 2.31 7.65 -2.39 -0.02 2.29 16 28 H 0.12 3.94 6.29 -2.91 -0.02 3.92 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.35 4.33 9.06 -89.70 -0.81 3.51 16 36 H 0.34 5.37 8.98 -89.69 -0.81 4.57 16 Total: -1.00 -66.33 298.34 1.45 -64.88 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.58 Total: 15.48 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 2.34 Total: -40.24 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.27 Total: -72.07 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.93 Total: -14.29 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -66.33 1.45 -64.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062798618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.866 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds