Wall clock time and date at job start Mon Mar 30 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.46776 * 179.97438 * 10 9 7 12 12 C 1.35904 * 116.99675 * 179.97438 * 11 10 9 13 13 C 1.38645 * 119.95080 * 0.02562 * 12 11 10 14 14 C 1.38119 * 119.86841 * 179.97438 * 13 12 11 15 15 C 1.38168 * 120.00053 * 0.02562 * 14 13 12 16 16 C 1.38505 * 120.33444 * 359.97438 * 15 14 13 17 17 C 1.38166 * 119.87528 * 359.78699 * 16 15 14 18 18 C 1.51363 * 109.77630 * 179.86869 * 17 16 15 19 19 C 1.54358 * 105.21981 * 343.14494 * 18 17 16 20 20 C 1.51373 * 130.36596 * 180.02562 * 16 15 14 21 21 H 1.09003 * 110.30475 * 78.23859 * 20 16 15 22 22 N 1.46907 * 110.30281 * 316.18239 * 20 16 15 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08002 * 120.06517 * 359.95880 * 13 12 11 29 29 H 1.07999 * 120.00050 * 180.02562 * 14 13 12 30 30 H 1.08006 * 119.83397 * 179.97438 * 15 14 13 31 31 H 1.09002 * 110.43215 * 224.12858 * 18 17 16 32 32 H 1.08998 * 110.20811 * 102.04455 * 18 17 16 33 33 H 1.08993 * 110.82324 * 267.93189 * 19 18 17 34 34 H 1.08994 * 110.82128 * 144.37170 * 19 18 17 35 35 H 1.00899 * 110.99805 * 61.45679 * 22 20 16 36 36 H 1.00902 * 110.99403 * 185.40953 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8996 0.0001 12 6 2.2712 -6.0393 -0.0004 13 6 3.6556 -5.9655 -0.0009 14 6 4.4063 -7.1249 -0.0008 15 6 3.7773 -8.3551 -0.0008 16 6 2.3945 -8.4338 -0.0003 17 6 1.6393 -7.2768 0.0046 18 6 0.1666 -7.6263 0.0008 19 6 0.1022 -9.1046 -0.4388 20 6 1.4812 -9.6410 0.0003 21 1 1.4194 -10.0681 1.0013 22 7 1.9661 -10.6475 -0.9535 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 4.1462 -5.0033 -0.0015 29 1 5.4849 -7.0699 -0.0008 30 1 4.3669 -9.2601 -0.0012 31 1 -0.3720 -6.9972 -0.7079 32 1 -0.2504 -7.5108 1.0012 33 1 -0.0175 -9.1827 -1.5193 34 1 -0.7006 -9.6284 0.0801 35 1 2.8871 -10.9722 -0.6996 36 1 1.3185 -11.4179 -1.0266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062798619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:07 Heat of formation + Delta-G solvation = -32.771491 kcal Electronic energy + Delta-G solvation = -17275.454341 eV Core-core repulsion = 14530.634732 eV Total energy + Delta-G solvation = -2744.819609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38558 -38.18427 -35.65432 -33.73780 -32.86597 -30.33117 -29.38133 -28.44303 -25.75231 -24.51239 -22.40347 -21.82929 -20.69203 -19.98163 -17.49090 -16.54720 -16.08028 -15.94834 -15.66609 -15.33822 -15.23876 -14.00273 -13.76049 -13.62921 -13.43601 -12.90928 -12.76194 -12.17448 -11.79591 -11.65758 -11.57297 -11.49629 -11.04050 -10.99189 -10.82671 -10.75816 -10.16180 -9.96518 -9.89368 -9.07242 -8.74731 -8.45027 -8.40395 -7.80969 -6.45781 -4.16645 1.42914 1.65294 3.39937 3.43872 3.59538 3.77784 3.86161 4.36372 4.45405 4.48758 4.54267 4.93120 5.09237 5.12658 5.26977 5.33071 5.41144 5.49578 5.64889 5.77617 5.87407 5.89620 5.93316 6.04385 6.13599 6.23821 6.44720 6.55633 6.61114 6.65779 6.88437 6.95116 7.18621 7.23589 7.35761 7.90092 8.07852 8.34615 8.76799 9.56413 10.95748 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043816 B = 0.004266 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.889183 B = 6561.897397 C = 7126.874787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 1.075 2.925 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.607 4.607 8 H 0.052 0.948 9 C 0.013 3.987 10 C 0.072 3.928 11 O -0.317 6.317 12 C 0.156 3.844 13 C -0.210 4.210 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.056 4.056 17 C -0.133 4.133 18 C -0.070 4.070 19 C -0.115 4.115 20 C 0.131 3.869 21 H 0.051 0.949 22 N -0.840 5.840 23 H 0.271 0.729 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.341 0.659 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -19.862 0.614 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.903 3.097 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.646 4.646 8 H 0.070 0.930 9 C -0.024 4.024 10 C -0.002 4.002 11 O -0.230 6.230 12 C 0.109 3.891 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.056 4.056 17 C -0.134 4.134 18 C -0.107 4.107 19 C -0.152 4.152 20 C 0.020 3.980 21 H 0.069 0.931 22 N -0.370 5.370 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.271 -17.595 0.069 18.107 hybrid contribution 0.647 -2.195 0.856 2.443 sum 4.918 -19.790 0.926 20.413 Atomic orbital electron populations 1.70737 1.06893 1.30895 1.45758 1.25894 0.96506 1.02732 0.93444 0.83454 0.74612 0.74767 0.76859 1.21305 1.20813 1.21373 1.21852 0.94367 0.91232 1.57107 0.92959 1.19248 0.94839 0.90803 0.97537 1.23140 0.96690 0.80557 0.99856 1.86153 1.36572 1.13161 1.87097 1.18745 0.89885 0.86257 0.94216 1.21272 0.92735 0.99943 1.08950 1.20770 0.99384 0.91660 0.98123 1.20297 0.92891 0.97380 1.06117 1.20134 0.93171 0.93917 0.98401 1.19692 0.96416 0.90359 1.06968 1.20825 0.92320 0.95430 1.02138 1.22414 0.95011 0.95403 1.02415 1.20820 0.93365 0.90244 0.93593 0.93141 1.58761 1.07151 1.17696 1.53378 0.91827 0.96337 0.96292 0.92976 0.93011 0.85034 0.85917 0.86830 0.90311 0.90527 0.89839 0.90881 0.84635 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.65 55.43 0.76 -27.14 16 2 C 0.02 0.54 5.46 -17.82 -0.10 0.45 16 3 Si 1.08 25.13 29.90 -169.99 -5.08 20.05 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.61 -17.35 9.11 -34.44 -0.31 -17.67 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.01 0.34 4.65 -27.88 -0.13 0.21 16 10 C 0.07 1.59 4.68 37.16 0.17 1.76 16 11 O -0.32 -6.71 10.08 -19.44 -0.20 -6.91 16 12 C 0.16 2.87 6.69 -39.17 -0.26 2.60 16 13 C -0.21 -3.47 9.03 -39.48 -0.36 -3.82 16 14 C -0.08 -1.12 10.04 -39.65 -0.40 -1.52 16 15 C -0.15 -1.94 9.87 -39.51 -0.39 -2.33 16 16 C -0.06 -0.77 5.79 -104.22 -0.60 -1.38 16 17 C -0.13 -2.16 6.11 -104.06 -0.64 -2.79 16 18 C -0.07 -0.96 6.70 -26.85 -0.18 -1.14 16 19 C -0.11 -1.24 6.75 -25.32 -0.17 -1.41 16 20 C 0.13 1.42 3.99 -67.83 -0.27 1.14 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 N -0.84 -7.61 9.25 -4.77 -0.04 -7.65 16 23 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 24 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 26 H 0.05 1.11 7.66 -51.93 -0.40 0.72 16 27 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 28 H 0.13 2.12 6.29 -52.49 -0.33 1.79 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.18 7.94 -52.48 -0.42 0.76 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.34 2.63 8.81 -39.29 -0.35 2.29 16 36 H 0.34 2.32 9.04 -39.29 -0.36 1.97 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -31.85 300.16 -8.78 -40.63 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.11 Total: 2.38 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.63 Total: -25.89 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.71 Total: -34.79 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.20 Total: -6.91 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.85 -8.78 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062798619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.856 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds