Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.46776 * 179.97438 * 10 9 7 12 12 C 1.35904 * 116.99675 * 179.97438 * 11 10 9 13 13 C 1.38645 * 119.95080 * 0.02562 * 12 11 10 14 14 C 1.38119 * 119.86841 * 179.97438 * 13 12 11 15 15 C 1.38168 * 120.00053 * 0.02562 * 14 13 12 16 16 C 1.38505 * 120.33444 * 359.97438 * 15 14 13 17 17 C 1.38166 * 119.87528 * 359.78699 * 16 15 14 18 18 C 1.51363 * 109.77630 * 179.86869 * 17 16 15 19 19 C 1.54358 * 105.21981 * 343.14494 * 18 17 16 20 20 C 1.51373 * 130.36596 * 180.02562 * 16 15 14 21 21 H 1.09003 * 110.30475 * 78.23859 * 20 16 15 22 22 N 1.46907 * 110.30281 * 316.18239 * 20 16 15 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08002 * 120.06517 * 359.95880 * 13 12 11 29 29 H 1.07999 * 120.00050 * 180.02562 * 14 13 12 30 30 H 1.08006 * 119.83397 * 179.97438 * 15 14 13 31 31 H 1.09002 * 110.43215 * 224.12858 * 18 17 16 32 32 H 1.08998 * 110.20811 * 102.04455 * 18 17 16 33 33 H 1.08993 * 110.82324 * 267.93189 * 19 18 17 34 34 H 1.08994 * 110.82128 * 144.37170 * 19 18 17 35 35 H 1.00899 * 110.99805 * 61.45679 * 22 20 16 36 36 H 1.00902 * 110.99403 * 185.40953 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8996 0.0001 12 6 2.2712 -6.0393 -0.0004 13 6 3.6556 -5.9655 -0.0009 14 6 4.4063 -7.1249 -0.0008 15 6 3.7773 -8.3551 -0.0008 16 6 2.3945 -8.4338 -0.0003 17 6 1.6393 -7.2768 0.0046 18 6 0.1666 -7.6263 0.0008 19 6 0.1022 -9.1046 -0.4388 20 6 1.4812 -9.6410 0.0003 21 1 1.4194 -10.0681 1.0013 22 7 1.9661 -10.6475 -0.9535 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 4.1462 -5.0033 -0.0015 29 1 5.4849 -7.0699 -0.0008 30 1 4.3669 -9.2601 -0.0012 31 1 -0.3720 -6.9972 -0.7079 32 1 -0.2504 -7.5108 1.0012 33 1 -0.0175 -9.1827 -1.5193 34 1 -0.7006 -9.6284 0.0801 35 1 2.8871 -10.9722 -0.6996 36 1 1.3185 -11.4179 -1.0266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062798619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -53.547384 kcal Electronic energy + Delta-G solvation = -17276.355251 eV Core-core repulsion = 14530.634732 eV Total energy + Delta-G solvation = -2745.720519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58061 -39.55353 -36.77513 -35.84832 -33.83024 -32.16753 -30.57770 -29.67727 -26.88816 -26.38333 -23.97290 -23.24742 -21.90395 -21.20134 -19.20494 -18.28898 -17.26224 -17.21317 -16.77873 -16.51750 -16.35677 -15.68613 -15.41670 -14.68124 -14.65153 -14.34678 -14.24095 -13.81117 -13.61116 -13.20951 -12.67367 -12.56510 -12.52473 -12.26793 -12.03570 -11.98645 -11.92129 -11.71558 -11.70437 -10.92143 -10.62643 -9.89963 -9.43810 -9.11094 -8.79718 -6.52056 0.28369 0.45080 1.52134 1.61958 1.79912 2.25801 2.57429 2.70769 3.08005 3.42394 3.52541 3.65347 3.92408 3.98205 4.08043 4.10052 4.19999 4.29872 4.38942 4.53005 4.53962 4.57722 4.79016 4.86115 4.95828 5.04227 5.15077 5.17110 5.20842 5.37778 5.44704 5.53473 5.75955 5.88685 6.04877 6.22133 6.41137 6.46506 6.64221 7.31969 8.61856 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043816 B = 0.004266 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.889183 B = 6561.897397 C = 7126.874787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.035 4.035 3 Si 1.127 2.873 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.623 4.623 8 H 0.061 0.939 9 C 0.014 3.986 10 C 0.091 3.909 11 O -0.340 6.340 12 C 0.112 3.888 13 C -0.224 4.224 14 C -0.080 4.080 15 C -0.140 4.140 16 C -0.058 4.058 17 C -0.156 4.156 18 C -0.076 4.076 19 C -0.105 4.105 20 C 0.136 3.864 21 H 0.069 0.931 22 N -0.845 5.845 23 H 0.255 0.745 24 H -0.004 1.004 25 H -0.005 1.005 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.351 0.649 36 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -21.818 0.770 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.233 4.233 3 Si 0.947 3.053 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.660 4.660 8 H 0.080 0.920 9 C -0.023 4.023 10 C 0.017 3.983 11 O -0.255 6.255 12 C 0.067 3.933 13 C -0.243 4.243 14 C -0.098 4.098 15 C -0.158 4.158 16 C -0.059 4.059 17 C -0.157 4.157 18 C -0.113 4.113 19 C -0.143 4.143 20 C 0.025 3.975 21 H 0.087 0.913 22 N -0.378 5.378 23 H 0.065 0.935 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.165 0.835 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.270 -19.611 0.226 20.591 hybrid contribution 0.037 -1.758 0.801 1.933 sum 6.307 -21.370 1.028 22.305 Atomic orbital electron populations 1.70877 1.08088 1.29987 1.47895 1.27628 0.96514 1.07047 0.92097 0.82824 0.74151 0.70290 0.78048 1.19452 1.20647 1.18940 1.22256 0.95046 0.92145 1.56571 0.92025 1.19127 0.95191 0.92750 0.95248 1.22668 0.95078 0.80224 1.00356 1.86066 1.37371 1.13618 1.88425 1.19178 0.90957 0.85752 0.97433 1.21407 0.92180 1.01073 1.09647 1.21165 1.00909 0.90929 0.96796 1.20773 0.92926 0.98457 1.03635 1.20643 0.93923 0.94330 0.96976 1.20116 0.98044 0.90396 1.07124 1.20920 0.91035 0.97484 1.01886 1.22396 0.96330 0.93166 1.02401 1.20767 0.92157 0.89611 0.94943 0.91308 1.58677 1.08185 1.18140 1.52767 0.93517 0.98599 0.98682 0.92494 0.92325 0.85463 0.82725 0.83206 0.92275 0.90309 0.90328 0.88093 0.83511 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.65 21.45 0.29 -58.68 16 2 C -0.04 -2.06 5.46 84.65 0.46 -1.60 16 3 Si 1.13 50.08 29.90 68.60 2.05 52.13 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.62 -36.30 9.11 25.60 0.23 -36.06 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.01 0.78 4.65 29.85 0.14 0.92 16 10 C 0.09 4.21 4.68 71.98 0.34 4.55 16 11 O -0.34 -15.25 10.08 -92.47 -0.93 -16.19 16 12 C 0.11 4.24 6.69 22.54 0.15 4.39 16 13 C -0.22 -7.36 9.03 22.34 0.20 -7.16 16 14 C -0.08 -2.03 10.04 22.22 0.22 -1.81 16 15 C -0.14 -3.21 9.87 22.32 0.22 -2.99 16 16 C -0.06 -1.49 5.79 -19.60 -0.11 -1.61 16 17 C -0.16 -5.06 6.11 -19.50 -0.12 -5.18 16 18 C -0.08 -2.11 6.70 30.52 0.20 -1.90 16 19 C -0.11 -2.07 6.75 31.51 0.21 -1.86 16 20 C 0.14 2.54 3.99 44.84 0.18 2.72 16 21 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 22 N -0.84 -12.28 9.25 -168.99 -1.56 -13.84 16 23 H 0.26 16.54 7.22 -92.71 -0.67 15.87 16 24 H 0.00 -0.26 8.01 -2.39 -0.02 -0.28 16 25 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 26 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 27 H 0.06 2.57 7.66 -2.39 -0.02 2.55 16 28 H 0.13 4.14 6.29 -2.91 -0.02 4.13 16 29 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.15 2.35 7.94 -2.91 -0.02 2.33 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.35 3.97 8.81 -89.69 -0.79 3.18 16 36 H 0.36 3.54 9.04 -89.69 -0.81 2.73 16 Total: -1.00 -71.18 300.16 1.77 -69.41 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.41 Total: 14.75 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 2.33 Total: -47.58 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.27 Total: -72.52 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.93 Total: -16.19 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -71.18 1.77 -69.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062798619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.859 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds