Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47136 * 240.00280 * 3 2 1 5 5 H 1.48501 * 109.47387 * 120.00162 * 3 2 1 6 6 H 1.48496 * 109.46981 * 0.02562 * 3 2 1 7 7 C 1.39875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99820 * 154.19196 * 7 2 1 9 9 C 1.41129 * 119.99907 * 334.18690 * 7 2 1 10 10 C 1.40891 * 120.15750 * 334.60715 * 9 7 2 11 11 C 1.36338 * 119.83442 * 179.71228 * 10 9 7 12 12 C 1.39560 * 120.16088 * 0.56009 * 11 10 9 13 13 N 1.38868 * 119.84056 * 179.69024 * 12 11 10 14 14 C 1.46498 * 119.99896 * 0.02714 * 13 12 11 15 15 H 1.09004 * 109.52052 * 325.11944 * 14 13 12 16 16 C 1.53178 * 109.52206 * 204.99758 * 14 13 12 17 17 C 1.53171 * 109.03768 * 183.10779 * 16 14 13 18 18 C 1.53089 * 109.16260 * 56.98288 * 17 16 14 19 19 O 1.42905 * 109.41433 * 302.38873 * 18 17 16 20 20 C 1.42899 * 114.09571 * 61.15763 * 19 18 17 21 21 C 1.39563 * 120.31863 * 359.71374 * 12 11 10 22 22 C 1.36338 * 120.15848 * 359.97438 * 21 12 11 23 23 H 0.96999 * 119.99887 * 174.23768 * 1 2 3 24 24 H 1.08001 * 120.07867 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.91393 * 180.27536 * 11 10 9 26 26 H 0.97003 * 119.99794 * 180.02562 * 13 12 11 27 27 H 1.08998 * 109.54167 * 302.97870 * 16 14 13 28 28 H 1.09010 * 109.54440 * 63.24183 * 16 14 13 29 29 H 1.09001 * 109.52315 * 176.88342 * 17 16 14 30 30 H 1.08999 * 109.52922 * 297.01009 * 17 16 14 31 31 H 1.09007 * 109.48337 * 62.37225 * 18 17 16 32 32 H 1.08998 * 109.48549 * 182.39393 * 18 17 16 33 33 H 1.09002 * 109.48044 * 178.85636 * 20 19 18 34 34 H 1.09007 * 109.48482 * 58.82356 * 20 19 18 35 35 H 1.08005 * 119.91855 * 180.02562 * 21 12 11 36 36 H 1.08008 * 120.07709 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 3.0968 1.6965 1.2125 6 1 1.2780 2.7464 0.0006 7 6 2.0084 -1.2113 -0.0005 8 1 3.0075 -1.2577 -0.4077 9 6 1.4083 -2.3728 0.5311 10 6 0.3989 -2.2642 1.5080 11 6 -0.1804 -3.3904 2.0128 12 6 0.2324 -4.6489 1.5729 13 7 -0.3577 -5.7918 2.0963 14 6 -1.4113 -5.6746 3.1074 15 1 -1.2038 -4.8207 3.7524 16 6 -1.4568 -6.9532 3.9497 17 6 -2.6113 -6.8510 4.9511 18 6 -3.9173 -6.6103 4.1895 19 8 -3.7966 -5.4233 3.4029 20 6 -2.7636 -5.4793 2.4171 21 6 1.2358 -4.7643 0.6097 22 6 1.8196 -3.6465 0.0914 23 1 -0.4850 -0.8358 -0.0843 24 1 0.0818 -1.2911 1.8528 25 1 -0.9575 -3.3085 2.7585 26 1 -0.0722 -6.6676 1.7924 27 1 -1.6138 -7.8133 3.2988 28 1 -0.5161 -7.0688 4.4883 29 1 -2.6857 -7.7794 5.5173 30 1 -2.4287 -6.0215 5.6343 31 1 -4.1196 -7.4598 3.5371 32 1 -4.7361 -6.4943 4.8995 33 1 -2.7513 -4.5484 1.8502 34 1 -2.9507 -6.3140 1.7414 35 1 1.5500 -5.7414 0.2735 36 1 2.5957 -3.7373 -0.6543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070013187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -37.644842 kcal Electronic energy + Delta-G solvation = -17648.623139 eV Core-core repulsion = 14903.592206 eV Total energy + Delta-G solvation = -2745.030933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51444 -37.89477 -35.39497 -33.57839 -32.47175 -29.96946 -29.60100 -27.65660 -25.03351 -24.42158 -22.88221 -21.42385 -20.37724 -19.78975 -17.80588 -16.41804 -16.17557 -15.95013 -15.29007 -14.75855 -14.40246 -14.01252 -13.59239 -13.46244 -12.91912 -12.63593 -12.32445 -12.29209 -12.06383 -11.79870 -11.25913 -11.14714 -11.13518 -10.89749 -10.71833 -10.33922 -10.32093 -9.81429 -9.53865 -9.40468 -9.02390 -8.55966 -7.71796 -7.03972 -6.57340 -4.10382 2.89592 2.93141 3.24324 3.37274 3.44921 3.78474 4.15039 4.30260 4.69140 4.75127 4.76429 4.91895 5.10107 5.22277 5.38694 5.52055 5.63434 5.68349 5.74152 5.85860 5.91564 6.11825 6.12242 6.19985 6.30816 6.73492 6.80520 7.07242 7.19715 7.39977 7.47005 7.62041 7.89319 7.95394 8.19771 8.35718 8.44614 8.63770 8.94305 9.08307 10.24596 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037737 B = 0.004980 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.808779 B = 5620.677516 C = 6075.586769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 1.062 2.938 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.068 3.932 10 C -0.181 4.181 11 C -0.144 4.144 12 C 0.075 3.925 13 N -0.753 5.753 14 C 0.132 3.868 15 H 0.080 0.920 16 C -0.128 4.128 17 C -0.152 4.152 18 C 0.058 3.942 19 O -0.382 6.382 20 C 0.045 3.955 21 C -0.143 4.143 22 C -0.192 4.192 23 H 0.296 0.704 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.385 0.615 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -10.824 6.678 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.181 4.181 3 Si 0.887 3.113 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.065 3.935 10 C -0.201 4.201 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.389 5.389 14 C 0.025 3.975 15 H 0.098 0.902 16 C -0.167 4.167 17 C -0.190 4.190 18 C -0.019 4.019 19 O -0.300 6.300 20 C -0.034 4.034 21 C -0.165 4.165 22 C -0.212 4.212 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.110 0.890 26 H 0.217 0.783 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.061 -8.888 6.868 12.319 hybrid contribution 0.506 -2.375 -0.244 2.440 sum -4.555 -11.262 6.623 13.837 Atomic orbital electron populations 1.70483 1.08153 1.33913 1.30961 1.26852 0.95698 1.03981 0.91552 0.83685 0.75645 0.74245 0.77747 1.20396 1.20239 1.20074 1.20317 1.03247 0.94405 1.38397 0.91220 1.17575 0.92170 0.92527 0.91242 1.20777 1.02430 0.96769 1.00154 1.20063 1.02396 0.91608 1.02547 1.17258 0.98575 0.86014 1.00242 1.43776 1.42470 1.05644 1.46991 1.21182 0.87931 0.98006 0.90389 0.90187 1.21859 0.99049 0.97811 0.97945 1.22174 0.95478 1.02679 0.98695 1.22565 0.97107 0.88189 0.94052 1.87962 1.54521 1.37620 1.49900 1.23257 0.86970 1.02932 0.90192 1.19871 0.99352 0.97150 1.00112 1.20516 1.04718 0.92386 1.03607 0.89048 0.87617 0.88965 0.78271 0.91822 0.91053 0.90886 0.90815 0.93479 0.89090 0.88295 0.93498 0.89420 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.32 12.32 55.54 0.68 -21.64 16 2 C 0.04 1.03 4.92 -17.34 -0.09 0.94 16 3 Si 1.06 22.43 30.00 -169.99 -5.10 17.33 16 4 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.53 -14.68 8.96 -37.87 -0.34 -15.02 16 8 H 0.07 1.87 7.96 -52.49 -0.42 1.45 16 9 C 0.07 1.84 5.30 -106.80 -0.57 1.28 16 10 C -0.18 -4.72 7.90 -39.26 -0.31 -5.03 16 11 C -0.14 -3.34 8.79 -39.77 -0.35 -3.69 16 12 C 0.08 1.61 6.65 -83.69 -0.56 1.05 16 13 N -0.75 -12.73 5.22 -51.90 -0.27 -13.01 16 14 C 0.13 1.99 2.33 -67.79 -0.16 1.83 16 15 H 0.08 1.36 6.44 -51.93 -0.33 1.02 16 16 C -0.13 -1.49 5.50 -26.55 -0.15 -1.63 16 17 C -0.15 -1.53 6.14 -26.60 -0.16 -1.69 16 18 C 0.06 0.63 6.84 37.20 0.25 0.88 16 19 O -0.38 -5.64 10.77 -35.23 -0.38 -6.02 16 20 C 0.04 0.68 6.36 37.20 0.24 0.92 16 21 C -0.14 -3.17 9.82 -39.77 -0.39 -3.56 16 22 C -0.19 -4.77 9.74 -39.27 -0.38 -5.15 16 23 H 0.30 8.37 6.71 -40.82 -0.27 8.10 16 24 H 0.11 2.87 6.49 -52.49 -0.34 2.53 16 25 H 0.09 1.98 6.04 -52.48 -0.32 1.67 16 26 H 0.38 5.75 8.60 -40.82 -0.35 5.40 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.71 7.69 -51.93 -0.40 1.31 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -28.58 291.94 -8.66 -37.24 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.04 Total: 10.56 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.96 Total: -28.88 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.41 Total: -34.64 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.38 Total: -6.02 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.10 Total: 17.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.58 -8.66 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070013187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.405 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds