Wall clock time and date at job start Mon Mar 30 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47136 * 240.00280 * 3 2 1 5 5 H 1.48501 * 109.47387 * 120.00162 * 3 2 1 6 6 H 1.48496 * 109.46981 * 0.02562 * 3 2 1 7 7 C 1.39875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99820 * 154.19196 * 7 2 1 9 9 C 1.41129 * 119.99907 * 334.18690 * 7 2 1 10 10 C 1.40891 * 120.15750 * 334.60715 * 9 7 2 11 11 C 1.36338 * 119.83442 * 179.71228 * 10 9 7 12 12 C 1.39560 * 120.16088 * 0.56009 * 11 10 9 13 13 N 1.38868 * 119.84056 * 179.69024 * 12 11 10 14 14 C 1.46498 * 119.99896 * 0.02714 * 13 12 11 15 15 H 1.09004 * 109.52052 * 325.11944 * 14 13 12 16 16 C 1.53178 * 109.52206 * 204.99758 * 14 13 12 17 17 C 1.53171 * 109.03768 * 183.10779 * 16 14 13 18 18 C 1.53089 * 109.16260 * 56.98288 * 17 16 14 19 19 O 1.42905 * 109.41433 * 302.38873 * 18 17 16 20 20 C 1.42899 * 114.09571 * 61.15763 * 19 18 17 21 21 C 1.39563 * 120.31863 * 359.71374 * 12 11 10 22 22 C 1.36338 * 120.15848 * 359.97438 * 21 12 11 23 23 H 0.96999 * 119.99887 * 174.23768 * 1 2 3 24 24 H 1.08001 * 120.07867 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.91393 * 180.27536 * 11 10 9 26 26 H 0.97003 * 119.99794 * 180.02562 * 13 12 11 27 27 H 1.08998 * 109.54167 * 302.97870 * 16 14 13 28 28 H 1.09010 * 109.54440 * 63.24183 * 16 14 13 29 29 H 1.09001 * 109.52315 * 176.88342 * 17 16 14 30 30 H 1.08999 * 109.52922 * 297.01009 * 17 16 14 31 31 H 1.09007 * 109.48337 * 62.37225 * 18 17 16 32 32 H 1.08998 * 109.48549 * 182.39393 * 18 17 16 33 33 H 1.09002 * 109.48044 * 178.85636 * 20 19 18 34 34 H 1.09007 * 109.48482 * 58.82356 * 20 19 18 35 35 H 1.08005 * 119.91855 * 180.02562 * 21 12 11 36 36 H 1.08008 * 120.07709 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 3.0968 1.6965 1.2125 6 1 1.2780 2.7464 0.0006 7 6 2.0084 -1.2113 -0.0005 8 1 3.0075 -1.2577 -0.4077 9 6 1.4083 -2.3728 0.5311 10 6 0.3989 -2.2642 1.5080 11 6 -0.1804 -3.3904 2.0128 12 6 0.2324 -4.6489 1.5729 13 7 -0.3577 -5.7918 2.0963 14 6 -1.4113 -5.6746 3.1074 15 1 -1.2038 -4.8207 3.7524 16 6 -1.4568 -6.9532 3.9497 17 6 -2.6113 -6.8510 4.9511 18 6 -3.9173 -6.6103 4.1895 19 8 -3.7966 -5.4233 3.4029 20 6 -2.7636 -5.4793 2.4171 21 6 1.2358 -4.7643 0.6097 22 6 1.8196 -3.6465 0.0914 23 1 -0.4850 -0.8358 -0.0843 24 1 0.0818 -1.2911 1.8528 25 1 -0.9575 -3.3085 2.7585 26 1 -0.0722 -6.6676 1.7924 27 1 -1.6138 -7.8133 3.2988 28 1 -0.5161 -7.0688 4.4883 29 1 -2.6857 -7.7794 5.5173 30 1 -2.4287 -6.0215 5.6343 31 1 -4.1196 -7.4598 3.5371 32 1 -4.7361 -6.4943 4.8995 33 1 -2.7513 -4.5484 1.8502 34 1 -2.9507 -6.3140 1.7414 35 1 1.5500 -5.7414 0.2735 36 1 2.5957 -3.7373 -0.6543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070013187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:47 Heat of formation + Delta-G solvation = -54.807682 kcal Electronic energy + Delta-G solvation = -17649.367376 eV Core-core repulsion = 14903.592206 eV Total energy + Delta-G solvation = -2745.775170 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74103 -39.58992 -36.97664 -35.19185 -33.69877 -31.58999 -31.33895 -29.33528 -26.29997 -25.98890 -24.20593 -23.09808 -22.04255 -21.08537 -19.76705 -17.87565 -17.48886 -17.09100 -16.64720 -16.16435 -15.81828 -15.62960 -15.24143 -14.82743 -14.39970 -14.06166 -13.91901 -13.76735 -13.53840 -13.41050 -12.92533 -12.74264 -12.50116 -12.13860 -11.95894 -11.78235 -11.59266 -11.38236 -11.26392 -11.08822 -10.69124 -10.23724 -9.64797 -9.07807 -8.35030 -6.12460 0.95106 1.05995 1.51919 1.67466 1.81256 2.39775 2.57120 2.76779 3.10966 3.62973 3.70410 3.89140 3.96782 4.06109 4.16778 4.30235 4.34188 4.46915 4.61379 4.72534 4.78010 4.82310 4.90300 4.96106 5.01942 5.14870 5.18280 5.26992 5.46978 5.54799 5.72205 5.88496 5.91558 6.16732 6.30381 6.38414 6.66790 6.93455 7.07936 7.21449 8.18145 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037737 B = 0.004980 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.808779 B = 5620.677516 C = 6075.586769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.001 3.999 3 Si 1.115 2.885 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.572 4.572 8 H 0.064 0.936 9 C 0.031 3.969 10 C -0.195 4.195 11 C -0.156 4.156 12 C 0.104 3.896 13 N -0.739 5.739 14 C 0.129 3.871 15 H 0.057 0.943 16 C -0.121 4.121 17 C -0.147 4.147 18 C 0.048 3.952 19 O -0.405 6.405 20 C 0.052 3.948 21 C -0.148 4.148 22 C -0.198 4.198 23 H 0.278 0.722 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.401 0.599 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -13.309 7.655 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.213 4.213 3 Si 0.932 3.068 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.602 4.602 8 H 0.082 0.918 9 C 0.028 3.972 10 C -0.215 4.215 11 C -0.178 4.178 12 C 0.005 3.995 13 N -0.375 5.375 14 C 0.022 3.978 15 H 0.075 0.925 16 C -0.159 4.159 17 C -0.185 4.185 18 C -0.028 4.028 19 O -0.323 6.323 20 C -0.027 4.027 21 C -0.170 4.170 22 C -0.218 4.218 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.236 0.764 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.200 -11.443 7.860 14.824 hybrid contribution 0.436 -1.885 -0.444 1.986 sum -4.765 -13.328 7.416 15.979 Atomic orbital electron populations 1.70605 1.08911 1.32646 1.33932 1.28273 0.95717 1.07244 0.90035 0.83044 0.74735 0.70113 0.78867 1.18334 1.19127 1.19809 1.20506 1.03408 0.95787 1.40545 0.91769 1.17875 0.93395 0.93633 0.92335 1.20688 1.03164 0.96782 1.00831 1.20172 1.02789 0.91790 1.03073 1.17370 0.96969 0.86798 0.98327 1.43800 1.42136 1.04932 1.46653 1.21306 0.87040 0.99505 0.89902 0.92457 1.21827 1.00090 0.96031 0.97948 1.22169 0.94203 1.03961 0.98196 1.22884 0.98289 0.87255 0.94332 1.87938 1.54128 1.40019 1.50228 1.23023 0.87331 1.01819 0.90507 1.20192 0.98986 0.98020 0.99784 1.20743 1.04862 0.92511 1.03700 0.90985 0.89890 0.87899 0.76399 0.89919 0.90570 0.87728 0.91719 0.91893 0.87210 0.91483 0.92130 0.85709 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.29 12.32 21.82 0.27 -48.02 16 2 C 0.00 0.04 4.92 85.23 0.42 0.46 16 3 Si 1.11 46.19 30.00 68.60 2.06 48.24 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.57 -32.79 8.96 23.38 0.21 -32.58 16 8 H 0.06 3.59 7.96 -2.91 -0.02 3.57 16 9 C 0.03 1.72 5.30 -21.27 -0.11 1.61 16 10 C -0.19 -10.58 7.90 22.48 0.18 -10.40 16 11 C -0.16 -7.34 8.79 22.15 0.19 -7.14 16 12 C 0.10 4.32 6.65 38.67 0.26 4.57 16 13 N -0.74 -23.04 5.22 -318.12 -1.66 -24.70 16 14 C 0.13 3.61 2.33 45.08 0.11 3.72 16 15 H 0.06 1.89 6.44 -2.38 -0.02 1.88 16 16 C -0.12 -2.35 5.50 30.71 0.17 -2.18 16 17 C -0.15 -2.42 6.14 30.68 0.19 -2.23 16 18 C 0.05 0.89 6.84 72.01 0.49 1.38 16 19 O -0.40 -11.31 10.77 -148.98 -1.60 -12.91 16 20 C 0.05 1.50 6.36 72.01 0.46 1.96 16 21 C -0.15 -6.30 9.82 22.15 0.22 -6.08 16 22 C -0.20 -9.87 9.74 22.47 0.22 -9.65 16 23 H 0.28 16.74 6.71 -92.71 -0.62 16.12 16 24 H 0.08 4.80 6.49 -2.91 -0.02 4.78 16 25 H 0.10 4.54 6.04 -2.91 -0.02 4.52 16 26 H 0.40 10.35 8.60 -92.71 -0.80 9.55 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.35 7.69 -2.39 -0.02 2.33 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -64.82 291.94 2.48 -62.33 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.42 Total: 31.62 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 3.00 Total: -56.57 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.39 Total: -72.72 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.60 Total: -12.91 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.06 Total: 48.24 kcal Total: -64.82 2.48 -62.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070013187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -64.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds