Wall clock time and date at job start Mon Mar 30 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86803 * 120.00244 * 2 1 4 4 H 1.48491 * 109.47301 * 240.00404 * 3 2 1 5 5 H 1.48504 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46649 * 119.99991 * 3 2 1 7 7 C 1.39862 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99967 * 163.06327 * 7 2 1 9 9 C 1.41135 * 120.00202 * 343.06057 * 7 2 1 10 10 C 1.40887 * 120.15603 * 334.52530 * 9 7 2 11 11 C 1.36337 * 119.84036 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.15809 * 0.03346 * 11 10 9 13 13 N 1.38867 * 119.83990 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99799 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.57244 * 34.84461 * 14 13 12 16 16 C 1.53180 * 109.52119 * 155.00114 * 14 13 12 17 17 C 1.53176 * 109.03526 * 176.88768 * 16 14 13 18 18 C 1.53093 * 109.16289 * 303.01775 * 17 16 14 19 19 O 1.42901 * 109.41714 * 57.61015 * 18 17 16 20 20 C 1.42906 * 114.09646 * 298.84490 * 19 18 17 21 21 C 1.39566 * 120.31686 * 0.22318 * 12 11 10 22 22 C 1.36340 * 120.15799 * 359.48870 * 21 12 11 23 23 H 0.97002 * 119.99461 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.07817 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.92162 * 180.02562 * 11 10 9 26 26 H 0.96997 * 119.99635 * 0.02562 * 13 12 11 27 27 H 1.08995 * 109.54130 * 296.75323 * 16 14 13 28 28 H 1.08997 * 109.54076 * 57.02157 * 16 14 13 29 29 H 1.09000 * 109.52580 * 62.92218 * 17 16 14 30 30 H 1.09004 * 109.52105 * 183.11691 * 17 16 14 31 31 H 1.09002 * 109.48210 * 177.59249 * 18 17 16 32 32 H 1.09002 * 109.48114 * 297.62928 * 18 17 16 33 33 H 1.08998 * 109.47967 * 301.17141 * 20 19 18 34 34 H 1.09001 * 109.47705 * 181.13909 * 20 19 18 35 35 H 1.07995 * 119.91732 * 179.72430 * 21 12 11 36 36 H 1.07997 * 120.07743 * 180.27377 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7465 0.0006 6 1 3.0969 1.6962 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0533 -1.2315 -0.2730 9 6 1.3486 -2.4072 0.3550 10 6 0.2182 -2.3691 1.1951 11 6 -0.4145 -3.5282 1.5341 12 6 0.0555 -4.7505 1.0516 13 7 -0.5937 -5.9272 1.4015 14 6 -0.1036 -7.2121 0.8965 15 1 0.9839 -7.1866 0.8276 16 6 -0.5299 -8.3329 1.8497 17 6 -0.0797 -9.6782 1.2721 18 6 -0.6751 -9.8485 -0.1280 19 8 -0.2648 -8.7574 -0.9546 20 6 -0.6980 -7.4776 -0.4891 21 6 1.1779 -4.7964 0.2233 22 6 1.8170 -3.6447 -0.1286 23 1 -0.4849 0.8401 0.0004 24 1 -0.1467 -1.4238 1.5689 25 1 -1.2814 -3.5005 2.1776 26 1 -1.3720 -5.8982 1.9796 27 1 -0.0646 -8.1801 2.8234 28 1 -1.6146 -8.3269 1.9574 29 1 1.0083 -9.7025 1.2107 30 1 -0.4273 -10.4859 1.9163 31 1 -0.3234 -10.7849 -0.5612 32 1 -1.7629 -9.8646 -0.0610 33 1 -1.7861 -7.4628 -0.4268 34 1 -0.3629 -6.7061 -1.1823 35 1 1.5387 -5.7462 -0.1428 36 1 2.6828 -3.6813 -0.7731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070013190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:50 Heat of formation + Delta-G solvation = -48.570937 kcal Electronic energy + Delta-G solvation = -17538.433653 eV Core-core repulsion = 14792.928929 eV Total energy + Delta-G solvation = -2745.504724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65992 -39.40692 -36.76389 -35.04268 -33.67711 -31.82410 -30.96436 -29.56975 -26.32341 -25.95766 -24.15668 -22.89560 -21.95275 -21.05459 -19.12116 -17.71826 -17.48765 -17.03136 -16.93527 -16.30922 -15.76399 -15.62652 -14.87923 -14.78883 -14.19824 -13.93299 -13.87715 -13.66372 -13.54459 -13.26985 -12.89339 -12.73421 -12.51270 -12.32431 -12.10147 -11.73891 -11.52499 -11.38172 -11.17730 -11.13442 -10.73037 -10.13811 -9.41241 -8.54830 -8.17632 -6.02511 1.10024 1.18118 1.40469 1.51383 1.59541 2.27776 2.63229 2.84427 3.16220 3.75328 3.81263 3.94213 4.02438 4.10496 4.22988 4.44758 4.45761 4.51314 4.66473 4.77954 4.84084 4.93832 4.99130 5.04806 5.14796 5.21833 5.29793 5.31394 5.41564 5.71790 5.75619 5.91724 6.17652 6.23081 6.40928 6.66625 6.85853 7.08089 7.11841 7.29055 8.48521 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.057204 B = 0.004419 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.356918 B = 6334.749402 C = 6493.837161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.037 3.963 10 C -0.141 4.141 11 C -0.171 4.171 12 C 0.112 3.888 13 N -0.742 5.742 14 C 0.130 3.870 15 H 0.063 0.937 16 C -0.123 4.123 17 C -0.146 4.146 18 C 0.049 3.951 19 O -0.403 6.403 20 C 0.051 3.949 21 C -0.166 4.166 22 C -0.198 4.198 23 H 0.283 0.717 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.398 0.602 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -15.019 3.554 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.034 3.966 10 C -0.161 4.161 11 C -0.193 4.193 12 C 0.013 3.987 13 N -0.377 5.377 14 C 0.023 3.977 15 H 0.081 0.919 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.027 4.027 19 O -0.321 6.321 20 C -0.027 4.027 21 C -0.188 4.188 22 C -0.219 4.219 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.396 -15.028 3.272 15.751 hybrid contribution -0.041 1.162 0.187 1.178 sum -3.437 -13.866 3.460 14.699 Atomic orbital electron populations 1.69906 1.08702 1.29867 1.38526 1.26600 0.95479 1.04032 0.91779 0.85339 0.78758 0.76280 0.79772 1.18734 1.19372 1.18737 1.19579 0.97640 0.92679 1.44011 0.91496 1.17814 0.93654 0.92930 0.92163 1.20869 0.98708 0.96726 0.99760 1.20242 1.02096 0.91648 1.05334 1.17420 0.94887 0.86265 1.00147 1.43864 1.34582 1.01871 1.57405 1.21309 0.98635 0.84032 0.93675 0.91901 1.21836 1.02225 0.93445 0.98565 1.22166 1.01802 0.97308 0.97166 1.22873 0.99229 0.89808 0.90831 1.87929 1.78061 1.15141 1.50970 1.23038 0.98613 0.84785 0.96308 1.20122 0.97954 0.97211 1.03560 1.20760 1.03131 0.93063 1.04902 0.90715 0.88098 0.87155 0.76745 0.90643 0.90280 0.91453 0.87921 0.87135 0.92159 0.92535 0.91013 0.87242 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.21 10.96 21.82 0.24 -45.97 16 2 C 0.03 1.75 5.15 85.22 0.44 2.19 16 3 Si 0.98 40.41 29.59 68.60 2.03 42.44 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.51 -28.93 9.03 23.37 0.21 -28.72 16 8 H 0.07 3.70 7.90 -2.91 -0.02 3.68 16 9 C 0.04 2.10 5.57 -21.27 -0.12 1.98 16 10 C -0.14 -7.60 8.63 22.47 0.19 -7.41 16 11 C -0.17 -7.94 9.82 22.15 0.22 -7.72 16 12 C 0.11 4.74 6.65 38.67 0.26 5.00 16 13 N -0.74 -23.85 5.22 -318.11 -1.66 -25.51 16 14 C 0.13 3.59 2.34 45.08 0.11 3.70 16 15 H 0.06 1.98 6.43 -2.39 -0.02 1.97 16 16 C -0.12 -2.40 5.50 30.71 0.17 -2.23 16 17 C -0.15 -2.34 6.14 30.68 0.19 -2.16 16 18 C 0.05 0.87 6.84 72.01 0.49 1.36 16 19 O -0.40 -10.81 10.77 -148.98 -1.60 -12.41 16 20 C 0.05 1.45 6.37 72.01 0.46 1.91 16 21 C -0.17 -7.53 8.81 22.15 0.20 -7.33 16 22 C -0.20 -10.21 9.74 22.47 0.22 -9.99 16 23 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 24 H 0.10 5.72 6.19 -2.91 -0.02 5.71 16 25 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 26 H 0.40 11.06 8.60 -92.71 -0.80 10.26 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 2.41 7.73 -2.39 -0.02 2.39 16 35 H 0.11 4.46 6.06 -2.91 -0.02 4.44 16 36 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -62.99 292.75 2.31 -60.68 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.28 Total: 30.18 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 3.03 Total: -49.41 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.42 Total: -71.48 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.60 Total: -12.41 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -62.99 2.31 -60.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070013190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds