Wall clock time and date at job start Mon Mar 30 2020 06:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48491 * 109.47324 * 269.99821 * 3 2 1 5 5 H 1.48506 * 109.47223 * 30.00030 * 3 2 1 6 6 H 1.48506 * 109.46883 * 149.99697 * 3 2 1 7 7 C 1.37874 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99419 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00461 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47332 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47213 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.46903 * 111.00161 * 179.97438 * 12 11 10 14 14 H 1.09003 * 110.82979 * 37.26087 * 13 12 11 15 15 C 1.54705 * 110.94259 * 273.54599 * 13 12 11 16 16 O 1.43758 * 102.79031 * 267.11707 * 15 13 12 17 17 C 1.36138 * 109.26228 * 332.33242 * 16 15 13 18 18 C 1.39285 * 129.88554 * 198.45981 * 17 16 15 19 19 C 1.37931 * 120.23815 * 180.60925 * 18 17 16 20 20 C 1.38285 * 120.35466 * 0.09046 * 19 18 17 21 21 C 1.38355 * 119.76631 * 359.82687 * 20 19 18 22 22 C 1.37740 * 119.97355 * 359.97438 * 21 20 19 23 23 H 0.97006 * 120.00532 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47007 * 60.00086 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00815 * 9 7 2 26 26 H 1.09002 * 109.47119 * 60.00511 * 10 9 7 27 27 H 1.08998 * 109.47673 * 300.00396 * 10 9 7 28 28 H 1.09000 * 109.47579 * 59.99980 * 11 10 9 29 29 H 1.09003 * 109.47002 * 300.00140 * 11 10 9 30 30 H 1.00899 * 111.00214 * 303.95490 * 12 11 10 31 31 H 1.08999 * 110.74652 * 148.79359 * 15 13 12 32 32 H 1.09001 * 110.90429 * 25.52121 * 15 13 12 33 33 H 1.07994 * 119.88251 * 0.57874 * 18 17 16 34 34 H 1.07996 * 119.82428 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.12234 * 179.55538 * 20 19 18 36 36 H 1.07996 * 120.01489 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5515 -2.6363 0.0001 12 7 6.0413 -4.0213 -0.0004 13 6 7.5098 -4.0605 -0.0009 14 1 7.9191 -3.2604 0.6159 15 6 8.0644 -3.9856 -1.4432 16 8 8.2070 -5.3704 -1.8017 17 6 8.4157 -6.1066 -0.6757 18 6 8.9388 -7.3894 -0.5315 19 6 9.0521 -7.9566 0.7207 20 6 8.6462 -7.2587 1.8433 21 6 8.1271 -5.9833 1.7088 22 6 8.0169 -5.4134 0.4597 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8904 26 1 3.6580 -3.1504 -0.8897 27 1 3.6586 -3.1501 0.8902 28 1 5.9149 -2.1224 0.8901 29 1 5.9149 -2.1225 -0.8899 30 1 5.6658 -4.5379 0.7808 31 1 9.0304 -3.4810 -1.4597 32 1 7.3580 -3.4857 -2.1061 33 1 9.2563 -7.9421 -1.4033 34 1 9.4590 -8.9515 0.8248 35 1 8.7300 -7.7092 2.8213 36 1 7.8085 -5.4347 2.5829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070068949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:36 Heat of formation + Delta-G solvation = -12.166285 kcal Electronic energy + Delta-G solvation = -17041.079316 eV Core-core repulsion = 14297.153215 eV Total energy + Delta-G solvation = -2743.926100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25803 -37.56408 -36.39097 -33.74462 -32.08496 -30.71723 -30.01966 -28.63741 -26.25593 -23.50033 -22.54890 -21.90120 -21.18941 -20.07835 -17.40563 -16.92687 -16.76498 -16.55153 -15.71987 -15.01995 -14.50023 -14.39853 -13.95206 -13.91347 -13.59884 -12.93600 -12.78559 -12.62901 -12.40268 -11.77962 -11.73096 -11.65631 -11.15905 -10.97237 -10.86999 -10.82116 -9.97939 -9.77259 -9.63735 -9.19410 -9.16617 -8.53873 -8.42400 -8.26758 -6.03806 -4.01833 1.07930 1.22591 3.18614 3.30128 3.37320 3.40299 3.49864 4.19057 4.21376 4.44933 4.56387 4.71751 4.86984 5.01987 5.14367 5.23332 5.29838 5.35944 5.48537 5.50178 5.55757 5.70944 5.83222 6.09828 6.12662 6.25193 6.28831 6.43566 6.49558 6.51393 6.88379 7.01603 7.12287 7.31524 7.37695 7.46384 7.79909 8.55102 9.01750 9.58495 11.09772 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.003801 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.011690 B = 7364.601406 C = 7567.141961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.099 4.099 11 C 0.054 3.946 12 N -0.674 5.674 13 C 0.097 3.903 14 H 0.069 0.931 15 C 0.060 3.940 16 O -0.297 6.297 17 C 0.125 3.875 18 C -0.147 4.147 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.063 4.063 22 C -0.179 4.179 23 H 0.263 0.737 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.347 0.653 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.060 -12.098 2.017 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.137 4.137 11 C -0.074 4.074 12 N -0.306 5.306 13 C -0.013 4.013 14 H 0.087 0.913 15 C -0.016 4.016 16 O -0.210 6.210 17 C 0.078 3.922 18 C -0.165 4.165 19 C -0.100 4.100 20 C -0.174 4.174 21 C -0.081 4.081 22 C -0.180 4.180 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 20.825 -12.084 1.092 24.102 hybrid contribution 0.419 1.360 1.023 1.753 sum 21.244 -10.724 2.115 23.891 Atomic orbital electron populations 1.69917 1.06305 1.26855 1.51247 1.25046 0.94741 0.99182 0.94630 0.86761 0.80275 0.83627 0.78484 1.20282 1.21414 1.19127 1.21145 0.89497 0.94492 1.50632 0.91012 1.19538 0.97221 0.92137 0.96111 1.21446 0.90729 0.99801 1.01769 1.22277 0.98009 0.87183 0.99981 1.60644 1.04190 1.15363 1.50417 1.21645 0.90279 0.93757 0.95632 0.91334 1.23919 1.00885 0.80648 0.96115 1.86837 1.86590 1.19009 1.28578 1.19596 0.93850 0.93080 0.85626 1.20261 1.04254 0.93577 0.98441 1.20869 0.98143 0.99468 0.91470 1.20999 1.02709 0.94784 0.98884 1.20350 0.97223 0.95015 0.95561 1.20786 1.05108 0.97831 0.94295 0.92752 0.96842 0.97033 0.91812 0.92923 0.95438 0.91346 0.83416 0.90495 0.86779 0.85514 0.85269 0.85548 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 10 C -0.10 -1.96 5.41 -26.73 -0.14 -2.11 16 11 C 0.05 0.85 5.55 -3.83 -0.02 0.83 16 12 N -0.67 -9.62 6.33 -106.50 -0.67 -10.29 16 13 C 0.10 1.19 3.40 -67.50 -0.23 0.96 16 14 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 15 C 0.06 0.71 7.67 38.05 0.29 1.00 16 16 O -0.30 -4.11 11.10 -20.18 -0.22 -4.34 16 17 C 0.12 1.61 7.04 -38.95 -0.27 1.33 16 18 C -0.15 -1.58 10.06 -39.30 -0.40 -1.97 16 19 C -0.08 -0.73 10.02 -39.68 -0.40 -1.13 16 20 C -0.16 -1.42 10.07 -39.52 -0.40 -1.82 16 21 C -0.06 -0.66 10.03 -39.72 -0.40 -1.06 16 22 C -0.18 -2.18 5.69 -104.10 -0.59 -2.77 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.01 0.32 7.20 -51.92 -0.37 -0.06 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 30 H 0.35 4.82 8.51 -39.29 -0.33 4.49 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.36 7.83 -51.93 -0.41 0.95 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -31.90 301.67 -8.64 -40.54 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.29 Total: 0.47 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.10 Total: -20.65 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.10 Total: -37.71 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.22 Total: -4.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.90 -8.64 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.377 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds