Wall clock time and date at job start Mon Mar 30 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48491 * 109.47324 * 269.99821 * 3 2 1 5 5 H 1.48506 * 109.47223 * 30.00030 * 3 2 1 6 6 H 1.48506 * 109.46883 * 149.99697 * 3 2 1 7 7 C 1.37874 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99419 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00461 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47332 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47213 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.46903 * 111.00161 * 179.97438 * 12 11 10 14 14 H 1.09003 * 110.82979 * 37.26087 * 13 12 11 15 15 C 1.54705 * 110.94259 * 273.54599 * 13 12 11 16 16 O 1.43758 * 102.79031 * 267.11707 * 15 13 12 17 17 C 1.36138 * 109.26228 * 332.33242 * 16 15 13 18 18 C 1.39285 * 129.88554 * 198.45981 * 17 16 15 19 19 C 1.37931 * 120.23815 * 180.60925 * 18 17 16 20 20 C 1.38285 * 120.35466 * 0.09046 * 19 18 17 21 21 C 1.38355 * 119.76631 * 359.82687 * 20 19 18 22 22 C 1.37740 * 119.97355 * 359.97438 * 21 20 19 23 23 H 0.97006 * 120.00532 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47007 * 60.00086 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00815 * 9 7 2 26 26 H 1.09002 * 109.47119 * 60.00511 * 10 9 7 27 27 H 1.08998 * 109.47673 * 300.00396 * 10 9 7 28 28 H 1.09000 * 109.47579 * 59.99980 * 11 10 9 29 29 H 1.09003 * 109.47002 * 300.00140 * 11 10 9 30 30 H 1.00899 * 111.00214 * 303.95490 * 12 11 10 31 31 H 1.08999 * 110.74652 * 148.79359 * 15 13 12 32 32 H 1.09001 * 110.90429 * 25.52121 * 15 13 12 33 33 H 1.07994 * 119.88251 * 0.57874 * 18 17 16 34 34 H 1.07996 * 119.82428 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.12234 * 179.55538 * 20 19 18 36 36 H 1.07996 * 120.01489 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5515 -2.6363 0.0001 12 7 6.0413 -4.0213 -0.0004 13 6 7.5098 -4.0605 -0.0009 14 1 7.9191 -3.2604 0.6159 15 6 8.0644 -3.9856 -1.4432 16 8 8.2070 -5.3704 -1.8017 17 6 8.4157 -6.1066 -0.6757 18 6 8.9388 -7.3894 -0.5315 19 6 9.0521 -7.9566 0.7207 20 6 8.6462 -7.2587 1.8433 21 6 8.1271 -5.9833 1.7088 22 6 8.0169 -5.4134 0.4597 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8904 26 1 3.6580 -3.1504 -0.8897 27 1 3.6586 -3.1501 0.8902 28 1 5.9149 -2.1224 0.8901 29 1 5.9149 -2.1225 -0.8899 30 1 5.6658 -4.5379 0.7808 31 1 9.0304 -3.4810 -1.4597 32 1 7.3580 -3.4857 -2.1061 33 1 9.2563 -7.9421 -1.4033 34 1 9.4590 -8.9515 0.8248 35 1 8.7300 -7.7092 2.8213 36 1 7.8085 -5.4347 2.5829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070068949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:35 Heat of formation + Delta-G solvation = -33.327085 kcal Electronic energy + Delta-G solvation = -17041.996917 eV Core-core repulsion = 14297.153215 eV Total energy + Delta-G solvation = -2744.843701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11841 -38.36522 -37.63608 -35.50492 -33.78308 -31.89946 -30.87613 -29.71370 -27.87220 -24.63257 -23.69969 -22.94462 -22.19683 -21.69929 -18.92536 -18.26668 -17.68472 -17.62420 -16.58073 -16.35530 -16.19477 -15.47200 -15.28958 -14.91063 -14.70571 -14.42902 -14.13516 -13.67400 -13.55732 -13.28632 -13.06018 -12.62182 -12.54889 -12.46218 -12.05191 -11.78890 -11.69838 -11.52809 -11.47476 -11.28081 -10.76805 -9.99825 -9.45135 -9.12862 -8.29597 -6.34447 0.30264 0.43831 1.36385 1.38486 1.50492 2.35415 2.36496 2.68923 3.05647 3.19143 3.33223 3.70151 3.89766 4.17702 4.19716 4.22138 4.33430 4.34226 4.54504 4.56584 4.59681 4.69496 4.71861 4.87315 4.93927 5.06977 5.09181 5.38991 5.46796 5.49397 5.55254 5.59378 5.65538 5.70128 5.96245 6.23938 6.27484 6.32632 6.74168 7.30215 8.87587 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.003801 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.011690 B = 7364.601406 C = 7567.141961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.091 4.091 11 C 0.068 3.932 12 N -0.683 5.683 13 C 0.098 3.902 14 H 0.082 0.918 15 C 0.056 3.944 16 O -0.321 6.321 17 C 0.094 3.906 18 C -0.158 4.158 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.072 4.072 22 C -0.194 4.194 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.347 0.653 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.780 -11.859 2.917 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.047 4.047 10 C -0.129 4.129 11 C -0.060 4.060 12 N -0.316 5.316 13 C -0.011 4.011 14 H 0.100 0.900 15 C -0.019 4.019 16 O -0.235 6.235 17 C 0.048 3.952 18 C -0.177 4.177 19 C -0.096 4.096 20 C -0.171 4.171 21 C -0.091 4.091 22 C -0.195 4.195 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.567 -11.870 1.994 26.462 hybrid contribution -0.476 1.123 0.769 1.442 sum 23.091 -10.746 2.764 25.618 Atomic orbital electron populations 1.70084 1.08474 1.28232 1.52710 1.26110 0.95684 1.03842 0.94032 0.85567 0.79510 0.77723 0.79266 1.19100 1.21026 1.16599 1.21530 0.92409 0.92993 1.50450 0.95490 1.19479 0.93658 0.94842 0.96694 1.21261 0.93952 0.97069 1.00661 1.22006 0.94631 0.88412 1.00958 1.60571 1.05928 1.14334 1.50720 1.21673 0.88667 0.94579 0.96214 0.90013 1.24045 1.01954 0.80208 0.95673 1.86784 1.87149 1.19924 1.29623 1.19950 0.95533 0.94100 0.85573 1.20600 1.04141 0.93104 0.99808 1.21280 0.97060 1.00620 0.90622 1.21402 1.01269 0.94191 1.00251 1.20643 0.97215 0.95797 0.95402 1.20879 1.05970 0.97793 0.94855 0.92487 0.95900 0.96067 0.93548 0.93577 0.94202 0.90550 0.83391 0.88222 0.87352 0.84531 0.82178 0.82817 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.54 -31.63 9.66 25.60 0.25 -31.38 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.41 4.04 29.84 0.12 -0.29 16 10 C -0.09 -3.59 5.41 30.59 0.17 -3.42 16 11 C 0.07 2.04 5.55 86.30 0.48 2.52 16 12 N -0.68 -18.79 6.33 -490.85 -3.11 -21.90 16 13 C 0.10 2.27 3.40 45.05 0.15 2.43 16 14 H 0.08 1.66 7.91 -2.39 -0.02 1.65 16 15 C 0.06 1.28 7.67 72.56 0.56 1.83 16 16 O -0.32 -8.82 11.10 -95.12 -1.06 -9.88 16 17 C 0.09 2.35 7.04 22.68 0.16 2.51 16 18 C -0.16 -3.18 10.06 22.45 0.23 -2.95 16 19 C -0.08 -1.19 10.02 22.21 0.22 -0.97 16 20 C -0.15 -2.35 10.07 22.31 0.22 -2.12 16 21 C -0.07 -1.36 10.03 22.18 0.22 -1.13 16 22 C -0.19 -4.47 5.69 -19.53 -0.11 -4.58 16 23 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 24 H 0.02 1.03 7.20 -2.38 -0.02 1.01 16 25 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 29 H 0.08 2.17 7.87 -2.39 -0.02 2.15 16 30 H 0.35 9.37 8.51 -89.69 -0.76 8.61 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 2.50 7.83 -2.39 -0.02 2.48 16 33 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.38 301.67 1.39 -68.98 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.24 Total: 14.39 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.13 Total: -37.11 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.81 Total: -82.59 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.06 Total: -9.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -70.38 1.39 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.656 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds