Wall clock time and date at job start Mon Mar 30 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99614 * 2 1 4 4 H 1.48498 * 109.46857 * 239.99913 * 3 2 1 5 5 H 1.48499 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46751 * 120.00171 * 3 2 1 7 7 C 1.37879 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47129 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00009 * 179.97438 * 12 11 10 14 14 H 1.08995 * 110.83561 * 322.73952 * 13 12 11 15 15 C 1.54715 * 110.93588 * 86.45477 * 13 12 11 16 16 O 1.43767 * 102.78773 * 92.84279 * 15 13 12 17 17 C 1.36135 * 109.26308 * 27.66962 * 16 15 13 18 18 C 1.39284 * 129.88820 * 161.53804 * 17 16 15 19 19 C 1.37930 * 120.24057 * 179.39423 * 18 17 16 20 20 C 1.38287 * 120.35347 * 359.92076 * 19 18 17 21 21 C 1.38350 * 119.76292 * 0.41664 * 20 19 18 22 22 C 1.37744 * 119.97892 * 359.50822 * 21 20 19 23 23 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46773 * 60.00127 * 9 7 2 25 25 H 1.09001 * 109.47183 * 300.00697 * 9 7 2 26 26 H 1.09011 * 109.46639 * 60.00171 * 10 9 7 27 27 H 1.08995 * 109.47260 * 300.00579 * 10 9 7 28 28 H 1.08998 * 109.47109 * 60.00603 * 11 10 9 29 29 H 1.09007 * 109.47015 * 300.00187 * 11 10 9 30 30 H 1.00898 * 111.00131 * 303.95537 * 12 11 10 31 31 H 1.08999 * 110.74595 * 334.51835 * 15 13 12 32 32 H 1.08996 * 110.90061 * 211.24264 * 15 13 12 33 33 H 1.08002 * 119.87941 * 359.40931 * 18 17 16 34 34 H 1.08008 * 119.82308 * 179.90711 * 19 18 17 35 35 H 1.08002 * 120.11475 * 180.12962 * 20 19 18 36 36 H 1.08000 * 120.00780 * 179.76985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 7 2.4350 -6.1036 -0.0031 13 6 1.7347 -7.3950 -0.0031 14 1 0.8375 -7.3494 0.6140 15 6 1.3921 -7.8380 -1.4453 16 8 2.5206 -8.6532 -1.8044 17 6 3.0547 -9.2017 -0.6787 18 6 3.9049 -10.2955 -0.5349 19 6 4.3403 -10.6771 0.7171 20 6 3.9386 -9.9770 1.8400 21 6 3.0886 -8.8936 1.7063 22 6 2.6539 -8.5099 0.4569 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8727 -3.6047 0.8878 27 1 2.8714 -3.6039 -0.8922 28 1 0.8534 -5.0442 -0.8923 29 1 0.8541 -5.0455 0.8878 30 1 3.0698 -6.0362 -0.7844 31 1 1.3135 -6.9747 -2.1061 32 1 0.4721 -8.4221 -1.4644 33 1 4.2246 -10.8468 -1.4068 34 1 4.9982 -11.5273 0.8210 35 1 4.2835 -10.2779 2.8182 36 1 2.7695 -8.3464 2.5810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070068950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:39 Heat of formation + Delta-G solvation = -16.305150 kcal Electronic energy + Delta-G solvation = -16997.399042 eV Core-core repulsion = 14253.293468 eV Total energy + Delta-G solvation = -2744.105575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28786 -37.56883 -36.24663 -33.68578 -32.02388 -30.54450 -29.96271 -28.36968 -25.85086 -23.51674 -22.48958 -22.10613 -21.35937 -20.10633 -17.43920 -16.87233 -16.37970 -16.19023 -15.67606 -15.08915 -14.55190 -14.21349 -14.04714 -13.84222 -13.53882 -13.09577 -12.61501 -12.33671 -12.05548 -11.76873 -11.59744 -11.53171 -11.16095 -10.93124 -10.79444 -10.61124 -10.53171 -9.73065 -9.39549 -9.11385 -8.98638 -8.46487 -8.34475 -8.14976 -5.99948 -4.02153 1.18113 1.28944 3.15158 3.34123 3.38094 3.41030 3.57733 4.27667 4.39696 4.45181 4.50974 4.76866 4.92686 5.02941 5.16721 5.27014 5.33454 5.35933 5.49819 5.56039 5.71779 5.79844 5.91677 6.20149 6.24251 6.33259 6.40639 6.48369 6.66281 6.68987 7.05369 7.10046 7.22495 7.47972 7.66968 7.81282 7.99970 8.43220 9.04723 9.61917 11.11476 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.003593 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.340449 B = 7790.021532 C = 8012.419216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.674 5.674 13 C 0.099 3.901 14 H 0.104 0.896 15 C 0.018 3.982 16 O -0.304 6.304 17 C 0.105 3.895 18 C -0.145 4.145 19 C -0.086 4.086 20 C -0.154 4.154 21 C -0.052 4.052 22 C -0.156 4.156 23 H 0.261 0.739 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -21.145 0.604 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.071 4.071 12 N -0.304 5.304 13 C -0.012 4.012 14 H 0.122 0.878 15 C -0.060 4.060 16 O -0.218 6.218 17 C 0.060 3.940 18 C -0.163 4.163 19 C -0.104 4.104 20 C -0.172 4.172 21 C -0.071 4.071 22 C -0.157 4.157 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.433 -20.996 1.048 21.485 hybrid contribution -0.020 1.052 -0.869 1.365 sum 4.413 -19.944 0.179 20.427 Atomic orbital electron populations 1.69951 1.06067 1.26714 1.50917 1.25027 0.94856 0.99275 0.95328 0.86646 0.79572 0.83065 0.78657 1.20250 1.21303 1.20195 1.21219 0.93050 0.91051 1.50538 0.92700 1.19057 0.93962 0.91317 0.97129 1.21636 0.99251 0.92763 1.00909 1.22238 0.94112 0.90632 1.00101 1.60500 1.19748 0.99942 1.50198 1.21712 0.96090 0.89209 0.94191 0.87767 1.24626 0.88391 0.95106 0.97827 1.86839 1.43987 1.62031 1.28973 1.19654 0.95390 0.93349 0.85636 1.20213 1.01562 0.96183 0.98367 1.20847 0.98744 0.99349 0.91505 1.21049 1.00092 0.97275 0.98805 1.20358 0.95276 0.95445 0.95987 1.20672 1.03782 0.97254 0.94015 0.92960 0.96788 0.96542 0.92428 0.93555 0.95492 0.91144 0.83699 0.87487 0.90147 0.85730 0.85389 0.85597 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 11 C 0.06 0.95 5.55 -3.83 -0.02 0.93 16 12 N -0.67 -9.98 6.32 -106.50 -0.67 -10.66 16 13 C 0.10 1.25 3.40 -67.50 -0.23 1.02 16 14 H 0.10 1.24 7.91 -51.93 -0.41 0.83 16 15 C 0.02 0.20 7.45 38.06 0.28 0.49 16 16 O -0.30 -4.11 11.10 -20.17 -0.22 -4.33 16 17 C 0.11 1.37 7.04 -38.95 -0.27 1.09 16 18 C -0.14 -1.59 10.06 -39.31 -0.40 -1.99 16 19 C -0.09 -0.82 10.02 -39.68 -0.40 -1.21 16 20 C -0.15 -1.51 10.07 -39.52 -0.40 -1.91 16 21 C -0.05 -0.60 10.03 -39.72 -0.40 -1.00 16 22 C -0.16 -2.00 5.93 -104.10 -0.62 -2.61 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.43 7.86 -51.93 -0.41 0.03 16 29 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 30 H 0.34 5.10 8.53 -39.29 -0.34 4.77 16 31 H 0.11 1.20 7.82 -51.93 -0.41 0.79 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -31.04 305.27 -9.05 -40.09 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.33 Total: 0.60 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.14 Total: -20.77 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.06 Total: -37.00 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.22 Total: -4.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.04 -9.05 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.789 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds