Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99614 * 2 1 4 4 H 1.48498 * 109.46857 * 239.99913 * 3 2 1 5 5 H 1.48499 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46751 * 120.00171 * 3 2 1 7 7 C 1.37879 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47129 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00009 * 179.97438 * 12 11 10 14 14 H 1.08995 * 110.83561 * 322.73952 * 13 12 11 15 15 C 1.54715 * 110.93588 * 86.45477 * 13 12 11 16 16 O 1.43767 * 102.78773 * 92.84279 * 15 13 12 17 17 C 1.36135 * 109.26308 * 27.66962 * 16 15 13 18 18 C 1.39284 * 129.88820 * 161.53804 * 17 16 15 19 19 C 1.37930 * 120.24057 * 179.39423 * 18 17 16 20 20 C 1.38287 * 120.35347 * 359.92076 * 19 18 17 21 21 C 1.38350 * 119.76292 * 0.41664 * 20 19 18 22 22 C 1.37744 * 119.97892 * 359.50822 * 21 20 19 23 23 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46773 * 60.00127 * 9 7 2 25 25 H 1.09001 * 109.47183 * 300.00697 * 9 7 2 26 26 H 1.09011 * 109.46639 * 60.00171 * 10 9 7 27 27 H 1.08995 * 109.47260 * 300.00579 * 10 9 7 28 28 H 1.08998 * 109.47109 * 60.00603 * 11 10 9 29 29 H 1.09007 * 109.47015 * 300.00187 * 11 10 9 30 30 H 1.00898 * 111.00131 * 303.95537 * 12 11 10 31 31 H 1.08999 * 110.74595 * 334.51835 * 15 13 12 32 32 H 1.08996 * 110.90061 * 211.24264 * 15 13 12 33 33 H 1.08002 * 119.87941 * 359.40931 * 18 17 16 34 34 H 1.08008 * 119.82308 * 179.90711 * 19 18 17 35 35 H 1.08002 * 120.11475 * 180.12962 * 20 19 18 36 36 H 1.08000 * 120.00780 * 179.76985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 7 2.4350 -6.1036 -0.0031 13 6 1.7347 -7.3950 -0.0031 14 1 0.8375 -7.3494 0.6140 15 6 1.3921 -7.8380 -1.4453 16 8 2.5206 -8.6532 -1.8044 17 6 3.0547 -9.2017 -0.6787 18 6 3.9049 -10.2955 -0.5349 19 6 4.3403 -10.6771 0.7171 20 6 3.9386 -9.9770 1.8400 21 6 3.0886 -8.8936 1.7063 22 6 2.6539 -8.5099 0.4569 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8727 -3.6047 0.8878 27 1 2.8714 -3.6039 -0.8922 28 1 0.8534 -5.0442 -0.8923 29 1 0.8541 -5.0455 0.8878 30 1 3.0698 -6.0362 -0.7844 31 1 1.3135 -6.9747 -2.1061 32 1 0.4721 -8.4221 -1.4644 33 1 4.2246 -10.8468 -1.4068 34 1 4.9982 -11.5273 0.8210 35 1 4.2835 -10.2779 2.8182 36 1 2.7695 -8.3464 2.5810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070068950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = -35.708814 kcal Electronic energy + Delta-G solvation = -16998.240448 eV Core-core repulsion = 14253.293468 eV Total energy + Delta-G solvation = -2744.946981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.19482 -38.42570 -37.55660 -35.53067 -33.62615 -31.76775 -30.86386 -29.54759 -27.57812 -24.76079 -23.83723 -23.05084 -22.42063 -21.74528 -18.52835 -18.33842 -17.68435 -17.29649 -16.57202 -16.53433 -16.29589 -15.45576 -15.33826 -14.82496 -14.42621 -14.28997 -14.18449 -13.62949 -13.44010 -13.33237 -12.84442 -12.65041 -12.60946 -12.46202 -12.31707 -12.08043 -11.75517 -11.54185 -11.39832 -11.13046 -10.55387 -9.86119 -9.56517 -9.09717 -8.20879 -6.31820 0.34619 0.45082 1.39752 1.42755 1.50740 2.28205 2.40509 2.70657 3.12237 3.21812 3.47280 3.52723 3.90844 4.09349 4.22125 4.26578 4.32004 4.33776 4.48377 4.55200 4.61480 4.70205 4.72993 4.94852 5.06516 5.10594 5.21403 5.40389 5.50515 5.51663 5.59606 5.68008 5.73628 5.84804 5.91823 6.22996 6.25918 6.27901 6.84729 7.37366 8.90737 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.003593 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.340449 B = 7790.021532 C = 8012.419216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.094 4.094 11 C 0.072 3.928 12 N -0.676 5.676 13 C 0.098 3.902 14 H 0.110 0.890 15 C 0.019 3.981 16 O -0.321 6.321 17 C 0.081 3.919 18 C -0.153 4.153 19 C -0.081 4.081 20 C -0.152 4.152 21 C -0.067 4.067 22 C -0.174 4.174 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.006 1.006 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.343 0.657 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -22.120 0.976 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.057 4.057 12 N -0.306 5.306 13 C -0.012 4.012 14 H 0.128 0.872 15 C -0.057 4.057 16 O -0.236 6.236 17 C 0.036 3.964 18 C -0.172 4.172 19 C -0.099 4.099 20 C -0.169 4.169 21 C -0.086 4.086 22 C -0.176 4.176 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.162 0.838 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.765 -21.993 1.422 22.780 hybrid contribution -0.417 1.269 -0.952 1.640 sum 5.348 -20.724 0.470 21.408 Atomic orbital electron populations 1.70078 1.07735 1.27873 1.51620 1.25973 0.95796 1.03329 0.94687 0.85511 0.78305 0.78125 0.79183 1.19218 1.20701 1.19213 1.21679 0.93514 0.92534 1.50674 0.92411 1.18953 0.94347 0.92847 0.94956 1.21381 0.98108 0.93026 1.00643 1.21930 0.93831 0.89519 1.00385 1.60412 1.19519 1.00369 1.50341 1.21744 0.96256 0.88077 0.95155 0.87187 1.24665 0.88768 0.95344 0.96943 1.86798 1.44648 1.62479 1.29669 1.19960 0.96561 0.94471 0.85442 1.20575 1.01068 0.95772 0.99750 1.21267 0.98230 0.99794 0.90601 1.21421 0.98937 0.96284 1.00301 1.20605 0.95907 0.96335 0.95712 1.20760 1.04612 0.97545 0.94662 0.92720 0.98821 0.98790 0.93038 0.93327 0.94895 0.91238 0.83778 0.87412 0.88313 0.84398 0.82104 0.82942 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.89 5.41 30.59 0.17 -3.73 16 11 C 0.07 2.40 5.55 86.30 0.48 2.87 16 12 N -0.68 -19.79 6.32 -490.85 -3.10 -22.89 16 13 C 0.10 2.44 3.40 45.05 0.15 2.59 16 14 H 0.11 2.55 7.91 -2.39 -0.02 2.53 16 15 C 0.02 0.44 7.45 72.57 0.54 0.98 16 16 O -0.32 -8.55 11.10 -95.09 -1.06 -9.60 16 17 C 0.08 2.03 7.04 22.68 0.16 2.19 16 18 C -0.15 -3.11 10.06 22.45 0.23 -2.89 16 19 C -0.08 -1.30 10.02 22.21 0.22 -1.08 16 20 C -0.15 -2.59 10.07 22.31 0.22 -2.36 16 21 C -0.07 -1.46 10.03 22.18 0.22 -1.23 16 22 C -0.17 -4.34 5.93 -19.53 -0.12 -4.45 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.03 1.06 7.86 -2.39 -0.02 1.04 16 29 H 0.07 2.33 8.09 -2.38 -0.02 2.31 16 30 H 0.34 10.10 8.53 -89.70 -0.76 9.33 16 31 H 0.11 2.37 7.82 -2.39 -0.02 2.35 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -66.62 305.27 1.57 -65.04 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.30 Total: 14.01 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 3.12 Total: -36.45 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.82 Total: -79.69 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.06 Total: -9.60 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.62 1.57 -65.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.335 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds