Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47100 * 300.00064 * 3 2 1 6 6 H 1.48501 * 109.47016 * 59.99909 * 3 2 1 7 7 C 1.37878 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47459 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47538 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99913 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00333 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99781 * 180.02562 * 13 12 11 16 16 C 1.50707 * 109.47247 * 180.02562 * 15 13 12 17 17 C 1.38238 * 119.99792 * 89.99994 * 16 15 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 13 22 22 H 0.96995 * 119.99482 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47130 * 60.00402 * 9 7 2 24 24 H 1.09004 * 109.47166 * 300.00266 * 9 7 2 25 25 H 1.08997 * 109.47769 * 60.00024 * 10 9 7 26 26 H 1.09004 * 109.47003 * 300.00090 * 10 9 7 27 27 H 1.09000 * 109.47395 * 59.99138 * 11 10 9 28 28 H 1.09004 * 109.46800 * 299.99864 * 11 10 9 29 29 H 0.96998 * 119.99656 * 0.02562 * 12 11 10 30 30 H 1.09005 * 109.47656 * 60.00320 * 15 13 12 31 31 H 1.09000 * 109.47265 * 299.99628 * 15 13 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7906 -7.5929 -0.0010 15 6 2.9624 -8.5167 -0.0020 16 6 2.2089 -9.8219 -0.0027 17 6 1.8638 -10.4200 -1.2003 18 6 1.1731 -11.6174 -1.2009 19 6 0.8280 -12.2170 -0.0042 20 6 1.1684 -11.6162 1.1933 21 6 1.8632 -10.4211 1.1941 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 0.8539 -5.0446 -0.8913 28 1 0.8534 -5.0451 0.8886 29 1 3.3860 -5.9233 -0.0014 30 1 3.5890 -8.4591 0.8881 31 1 3.5890 -8.4589 -0.8919 32 1 2.1338 -9.9517 -2.1353 33 1 0.9031 -12.0845 -2.1365 34 1 0.2888 -13.1528 -0.0048 35 1 0.8950 -12.0824 2.1284 36 1 2.1335 -9.9542 2.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = -58.081163 kcal Electronic energy + Delta-G solvation = -16498.472358 eV Core-core repulsion = 13752.555240 eV Total energy + Delta-G solvation = -2745.917119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00091 -39.61754 -36.94861 -35.17812 -33.88372 -32.89677 -31.74113 -29.36787 -27.79685 -24.94277 -23.45154 -22.62526 -22.30841 -21.06872 -18.58114 -17.96242 -17.69064 -16.87918 -16.79076 -16.43551 -16.07665 -15.80334 -15.20565 -14.82644 -14.26340 -14.24447 -13.96118 -13.70419 -13.61478 -13.34395 -12.90643 -12.73712 -12.55313 -12.34904 -11.98542 -11.84227 -11.67950 -11.59450 -11.23127 -10.88385 -10.56934 -10.07644 -9.77393 -9.60359 -8.20254 -6.31929 0.44262 0.54692 1.41708 1.41813 1.55178 1.67512 2.26207 2.42746 2.97126 3.13624 3.71318 3.97847 4.04194 4.18634 4.20665 4.24147 4.30320 4.42486 4.55000 4.61191 4.68123 4.80584 4.94047 4.99906 5.15722 5.17212 5.18942 5.45503 5.53336 5.58671 5.64693 5.69566 5.69996 5.83648 6.15750 6.21470 6.62817 6.86197 7.31408 7.38007 8.92196 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.068580 B = 0.003009 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.183166 B = 9304.583554 C = 9392.372526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.716 5.716 13 C 0.506 3.494 14 O -0.587 6.587 15 C -0.093 4.093 16 C -0.083 4.083 17 C -0.124 4.124 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.124 4.124 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.418 0.582 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -22.608 -0.006 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.468 6.468 15 C -0.132 4.132 16 C -0.083 4.083 17 C -0.142 4.142 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.142 4.142 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.255 0.745 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.328 -22.645 -0.006 24.128 hybrid contribution 0.055 1.245 0.001 1.247 sum 8.383 -21.400 -0.005 22.983 Atomic orbital electron populations 1.70126 1.08001 1.27744 1.51804 1.26051 0.95754 1.03651 0.94790 0.85348 0.79233 0.78543 0.77613 1.18078 1.20598 1.20587 1.21719 0.93790 0.91963 1.50287 0.91422 1.18957 0.94496 0.93145 0.94946 1.21587 0.98368 0.91695 1.02211 1.21190 0.92096 0.85854 1.00334 1.45993 1.11176 1.04973 1.74669 1.21293 0.89753 0.84555 0.75006 1.90712 1.19379 1.85412 1.51250 1.20739 0.96607 0.87926 1.07959 1.19573 0.99480 0.95359 0.93920 1.21278 0.98927 0.96165 0.97847 1.21429 0.98508 0.95811 0.99201 1.21475 1.00065 1.00902 0.92480 1.21430 0.98492 0.95835 0.99197 1.21276 0.98894 0.96186 0.97856 0.92819 0.99103 0.99114 0.91238 0.91245 0.93618 0.93616 0.74532 0.85128 0.85138 0.85378 0.84320 0.84082 0.84323 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.59 5.67 86.38 0.49 5.08 16 12 N -0.72 -18.85 5.56 -463.06 -2.57 -21.43 16 13 C 0.51 14.07 7.82 87.66 0.69 14.75 16 14 O -0.59 -22.62 16.03 -3.06 -0.05 -22.67 16 15 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 16 C -0.08 -1.81 4.37 -19.86 -0.09 -1.90 16 17 C -0.12 -2.65 9.70 22.27 0.22 -2.43 16 18 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 19 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 20 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 21 C -0.12 -2.65 9.70 22.27 0.22 -2.43 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.56 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.42 7.78 8.47 -92.71 -0.79 7.00 16 30 H 0.13 1.56 8.09 -2.38 -0.02 1.54 16 31 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 32 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -74.02 313.63 3.33 -70.70 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.27 Total: 12.11 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.37 Total: -27.28 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.29 Total: -78.62 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -74.02 3.33 -70.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.614 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds