Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48496 * 109.47362 * 269.99724 * 3 2 1 5 5 H 1.48499 * 109.47252 * 29.99816 * 3 2 1 6 6 H 1.48504 * 109.47124 * 149.99829 * 3 2 1 7 7 C 1.37880 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00095 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46628 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.94899 * 269.97579 * 10 9 7 12 12 C 1.38121 * 120.05823 * 180.02562 * 11 10 9 13 13 C 1.38749 * 119.94350 * 359.72353 * 12 11 10 14 14 O 1.35903 * 120.05609 * 180.27202 * 13 12 11 15 15 C 1.38710 * 119.88696 * 0.53447 * 13 12 11 16 16 C 1.50703 * 120.02636 * 179.74543 * 15 13 12 17 17 H 1.09002 * 110.36717 * 40.42023 * 16 15 13 18 18 C 1.54379 * 110.41195 * 278.06850 * 16 15 13 19 19 C 1.54257 * 105.06256 * 217.25122 * 18 16 15 20 20 C 1.54382 * 105.06052 * 0.02562 * 19 18 16 21 21 N 1.48562 * 110.41027 * 162.76980 * 16 15 13 22 22 C 1.38163 * 119.94754 * 359.46333 * 15 13 12 23 23 H 0.96998 * 120.00135 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46940 * 60.00372 * 9 7 2 25 25 H 1.08999 * 109.47022 * 299.99687 * 9 7 2 26 26 H 1.07999 * 119.96927 * 0.02945 * 11 10 9 27 27 H 1.07998 * 120.02562 * 179.97438 * 12 11 10 28 28 H 0.96703 * 114.00012 * 270.25706 * 14 13 12 29 29 H 1.08998 * 110.32365 * 336.14664 * 18 16 15 30 30 H 1.08997 * 110.32065 * 98.25053 * 18 16 15 31 31 H 1.08997 * 110.32124 * 118.89793 * 19 18 16 32 32 H 1.09002 * 110.32427 * 241.00362 * 19 18 16 33 33 H 1.09003 * 110.41233 * 142.63267 * 20 19 18 34 34 H 1.09004 * 110.41109 * 264.95803 * 20 19 18 35 35 H 1.00899 * 111.00206 * 277.93968 * 21 16 15 36 36 H 1.07994 * 119.97746 * 180.25339 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6446 0.0005 11 6 2.6787 -4.1696 -1.1977 12 6 3.5759 -5.2197 -1.2003 13 6 4.0319 -5.7441 0.0007 14 8 4.9189 -6.7737 0.0007 15 6 3.5766 -5.2192 1.2012 16 6 4.0654 -5.7902 2.5074 17 1 5.1311 -6.0117 2.4495 18 6 3.2699 -7.0625 2.8702 19 6 3.0994 -7.0055 4.4022 20 6 3.8057 -5.7032 4.8363 21 7 3.7925 -4.8448 3.6205 22 6 2.6792 -4.1687 1.1985 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.3270 -3.7581 -2.1322 27 1 3.9254 -5.6296 -2.1364 28 1 4.5064 -7.6483 -0.0009 29 1 2.2963 -7.0528 2.3803 30 1 3.8287 -7.9531 2.5827 31 1 2.0421 -6.9678 4.6643 32 1 3.5738 -7.8692 4.8684 33 1 3.2554 -5.2240 5.6461 34 1 4.8303 -5.9110 5.1448 35 1 4.5037 -4.1309 3.6712 36 1 2.3276 -3.7571 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072202124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = -28.542199 kcal Electronic energy + Delta-G solvation = -17667.900197 eV Core-core repulsion = 14923.263983 eV Total energy + Delta-G solvation = -2744.636213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73990 -37.79139 -36.42248 -33.12653 -31.46293 -30.49813 -30.16932 -27.58258 -26.41776 -23.14210 -22.71675 -20.89484 -20.81124 -19.50558 -17.79161 -16.69616 -16.30019 -15.69072 -15.19373 -14.97229 -14.54292 -13.68840 -13.53876 -12.99511 -12.90183 -12.51208 -12.26441 -12.14498 -11.92617 -11.71730 -11.35138 -11.28763 -11.08457 -10.98664 -10.60339 -10.49188 -10.45394 -9.81198 -9.51052 -9.38596 -8.51044 -8.38912 -8.13979 -7.59538 -6.00914 -4.04326 1.91481 2.04005 3.32737 3.38809 3.43420 4.20554 4.29906 4.49336 4.65402 4.76373 4.81188 5.02420 5.25192 5.33345 5.38419 5.54237 5.57197 5.66144 5.81526 5.85069 5.98180 6.05870 6.15254 6.21198 6.30978 6.53495 6.65533 6.75773 7.03212 7.22534 7.26076 7.42365 7.49125 7.62508 7.89491 7.95128 8.05274 8.35878 9.00760 9.59189 11.08959 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.006163 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.513009 B = 4542.352027 C = 5242.488977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.044 4.044 11 C -0.112 4.112 12 C -0.148 4.148 13 C 0.068 3.932 14 O -0.501 6.501 15 C -0.106 4.106 16 C 0.116 3.884 17 H 0.057 0.943 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.036 3.964 21 N -0.657 5.657 22 C -0.083 4.083 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.030 0.970 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.374 0.626 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.341 0.659 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -14.486 5.469 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.044 4.044 11 C -0.130 4.130 12 C -0.166 4.166 13 C 0.024 3.976 14 O -0.309 6.309 15 C -0.107 4.107 16 C 0.006 3.994 17 H 0.075 0.925 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.094 4.094 21 N -0.286 5.286 22 C -0.101 4.101 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.228 0.772 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.157 0.843 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.260 -13.837 5.405 16.120 hybrid contribution 1.152 0.403 -0.001 1.220 sum 7.411 -13.434 5.404 16.266 Atomic orbital electron populations 1.69959 1.06013 1.26750 1.50668 1.24999 0.94863 0.99190 0.95241 0.86549 0.79867 0.83241 0.78128 1.20646 1.21176 1.19821 1.21054 0.93016 0.89869 1.50773 0.92536 1.18341 0.92545 0.89544 0.98353 1.20796 0.96492 0.95233 0.91849 1.20999 0.97507 0.95872 0.98648 1.21213 0.99137 0.99482 0.96801 1.18105 0.94570 0.92942 0.91961 1.84813 1.33606 1.15894 1.96628 1.19843 0.99114 0.99241 0.92529 1.21099 0.97426 0.91564 0.89298 0.92469 1.22301 1.00878 0.96428 0.95736 1.22278 1.01345 0.96865 0.95655 1.22921 0.98721 0.93751 0.93989 1.63625 1.51673 1.11563 1.01738 1.20984 0.95756 0.94519 0.98865 0.92888 0.95428 0.95187 0.86169 0.86610 0.77204 0.90816 0.91600 0.91003 0.91685 0.90152 0.94513 0.84326 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.27 5.10 -29.03 -0.15 1.13 16 10 C -0.04 -0.96 5.07 -104.60 -0.53 -1.49 16 11 C -0.11 -2.22 9.69 -39.61 -0.38 -2.61 16 12 C -0.15 -2.57 9.99 -39.44 -0.39 -2.96 16 13 C 0.07 1.15 6.68 -39.22 -0.26 0.88 16 14 O -0.50 -7.06 12.77 -19.44 -0.25 -7.31 16 15 C -0.11 -1.83 5.01 -104.47 -0.52 -2.36 16 16 C 0.12 1.65 3.02 -67.22 -0.20 1.44 16 17 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16 18 C -0.12 -1.36 6.54 -25.35 -0.17 -1.53 16 19 C -0.12 -1.29 7.00 -25.35 -0.18 -1.46 16 20 C 0.04 0.40 7.48 -2.03 -0.02 0.38 16 21 N -0.66 -9.21 5.90 -103.73 -0.61 -9.83 16 22 C -0.08 -1.67 9.01 -39.60 -0.36 -2.03 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 26 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.37 3.52 9.06 45.56 0.41 3.94 16 29 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.34 4.61 8.93 -39.29 -0.35 4.26 16 36 H 0.14 2.84 7.11 -52.49 -0.37 2.47 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -31.01 301.87 -8.64 -39.64 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.47 Total: 5.83 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.57 Total: -23.77 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.12 Total: -35.71 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.25 Total: -7.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.01 -8.64 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072202124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.100 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds