Wall clock time and date at job start Mon Mar 30 2020 06:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48496 * 109.47362 * 269.99724 * 3 2 1 5 5 H 1.48499 * 109.47252 * 29.99816 * 3 2 1 6 6 H 1.48504 * 109.47124 * 149.99829 * 3 2 1 7 7 C 1.37880 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00095 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46628 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.94899 * 269.97579 * 10 9 7 12 12 C 1.38121 * 120.05823 * 180.02562 * 11 10 9 13 13 C 1.38749 * 119.94350 * 359.72353 * 12 11 10 14 14 O 1.35903 * 120.05609 * 180.27202 * 13 12 11 15 15 C 1.38710 * 119.88696 * 0.53447 * 13 12 11 16 16 C 1.50703 * 120.02636 * 179.74543 * 15 13 12 17 17 H 1.09002 * 110.36717 * 40.42023 * 16 15 13 18 18 C 1.54379 * 110.41195 * 278.06850 * 16 15 13 19 19 C 1.54257 * 105.06256 * 217.25122 * 18 16 15 20 20 C 1.54382 * 105.06052 * 0.02562 * 19 18 16 21 21 N 1.48562 * 110.41027 * 162.76980 * 16 15 13 22 22 C 1.38163 * 119.94754 * 359.46333 * 15 13 12 23 23 H 0.96998 * 120.00135 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46940 * 60.00372 * 9 7 2 25 25 H 1.08999 * 109.47022 * 299.99687 * 9 7 2 26 26 H 1.07999 * 119.96927 * 0.02945 * 11 10 9 27 27 H 1.07998 * 120.02562 * 179.97438 * 12 11 10 28 28 H 0.96703 * 114.00012 * 270.25706 * 14 13 12 29 29 H 1.08998 * 110.32365 * 336.14664 * 18 16 15 30 30 H 1.08997 * 110.32065 * 98.25053 * 18 16 15 31 31 H 1.08997 * 110.32124 * 118.89793 * 19 18 16 32 32 H 1.09002 * 110.32427 * 241.00362 * 19 18 16 33 33 H 1.09003 * 110.41233 * 142.63267 * 20 19 18 34 34 H 1.09004 * 110.41109 * 264.95803 * 20 19 18 35 35 H 1.00899 * 111.00206 * 277.93968 * 21 16 15 36 36 H 1.07994 * 119.97746 * 180.25339 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6446 0.0005 11 6 2.6787 -4.1696 -1.1977 12 6 3.5759 -5.2197 -1.2003 13 6 4.0319 -5.7441 0.0007 14 8 4.9189 -6.7737 0.0007 15 6 3.5766 -5.2192 1.2012 16 6 4.0654 -5.7902 2.5074 17 1 5.1311 -6.0117 2.4495 18 6 3.2699 -7.0625 2.8702 19 6 3.0994 -7.0055 4.4022 20 6 3.8057 -5.7032 4.8363 21 7 3.7925 -4.8448 3.6205 22 6 2.6792 -4.1687 1.1985 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.3270 -3.7581 -2.1322 27 1 3.9254 -5.6296 -2.1364 28 1 4.5064 -7.6483 -0.0009 29 1 2.2963 -7.0528 2.3803 30 1 3.8287 -7.9531 2.5827 31 1 2.0421 -6.9678 4.6643 32 1 3.5738 -7.8692 4.8684 33 1 3.2554 -5.2240 5.6461 34 1 4.8303 -5.9110 5.1448 35 1 4.5037 -4.1309 3.6712 36 1 2.3276 -3.7571 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072202124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:32 Heat of formation + Delta-G solvation = -49.738523 kcal Electronic energy + Delta-G solvation = -17668.819338 eV Core-core repulsion = 14923.263983 eV Total energy + Delta-G solvation = -2745.555355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04802 -38.87080 -37.80568 -35.17747 -32.83341 -32.17980 -31.16192 -28.95471 -28.07988 -25.08821 -23.99788 -22.29227 -21.78413 -20.80264 -19.06341 -18.50893 -17.71561 -17.04847 -16.56136 -16.37452 -16.17823 -15.13276 -14.67887 -14.48839 -14.47537 -13.91757 -13.50460 -13.45381 -13.31939 -13.13290 -12.93349 -12.80726 -12.56596 -12.35412 -12.22553 -12.12214 -11.56689 -11.44204 -11.32964 -11.12284 -10.60050 -9.64456 -9.47155 -9.15015 -8.19348 -6.32748 0.46336 0.56436 1.39010 1.40240 1.51817 2.39408 2.85542 3.10888 3.24106 3.43491 3.74544 3.82350 4.13569 4.16692 4.21638 4.29861 4.42569 4.63221 4.69550 4.75379 4.84729 4.95291 5.00034 5.09217 5.15409 5.20111 5.26476 5.34771 5.42983 5.53284 5.58788 5.74582 5.92047 6.06286 6.13201 6.21571 6.36842 6.79410 6.94863 7.35498 8.89762 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.006163 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.513009 B = 4542.352027 C = 5242.488977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.060 3.940 10 C -0.076 4.076 11 C -0.122 4.122 12 C -0.143 4.143 13 C 0.087 3.913 14 O -0.497 6.497 15 C -0.103 4.103 16 C 0.117 3.883 17 H 0.065 0.935 18 C -0.112 4.112 19 C -0.120 4.120 20 C 0.035 3.965 21 N -0.682 5.682 22 C -0.092 4.092 23 H 0.266 0.734 24 H 0.003 0.997 25 H 0.001 0.999 26 H 0.118 0.882 27 H 0.146 0.854 28 H 0.402 0.598 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.339 0.661 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -16.081 5.823 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.042 3.958 14 O -0.309 6.309 15 C -0.104 4.104 16 C 0.007 3.993 17 H 0.082 0.918 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.094 4.094 21 N -0.311 5.311 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.019 0.981 26 H 0.136 0.864 27 H 0.164 0.836 28 H 0.260 0.740 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.502 -15.469 5.764 18.569 hybrid contribution 0.490 0.772 -0.091 0.918 sum 8.992 -14.697 5.672 18.139 Atomic orbital electron populations 1.70081 1.07638 1.27924 1.51380 1.25912 0.95763 1.03039 0.94586 0.85452 0.78569 0.78479 0.78598 1.19586 1.20348 1.19189 1.21349 0.92926 0.91299 1.50857 0.93041 1.18058 0.92843 0.91160 0.95666 1.20477 0.97713 0.95588 0.93847 1.20993 0.98535 0.96937 0.97591 1.21450 0.97930 0.98219 0.98521 1.18100 0.93246 0.93137 0.91306 1.84746 1.32986 1.16749 1.96415 1.20117 0.97727 0.97839 0.94707 1.21146 0.97894 0.92397 0.87842 0.91761 1.22306 1.00005 0.96098 0.96604 1.22302 1.01333 0.97440 0.94749 1.23008 0.99917 0.93629 0.92850 1.63612 1.52024 1.12382 1.03056 1.20802 0.97094 0.95808 0.97338 0.92558 0.97821 0.98104 0.86403 0.83626 0.74035 0.92415 0.88885 0.91518 0.89005 0.90052 0.92766 0.84493 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 8 H 0.05 3.01 7.74 -2.92 -0.02 2.99 16 9 C 0.06 3.31 5.10 29.10 0.15 3.46 16 10 C -0.08 -3.51 5.07 -19.85 -0.10 -3.61 16 11 C -0.12 -4.91 9.69 22.25 0.22 -4.70 16 12 C -0.14 -4.69 9.99 22.36 0.22 -4.47 16 13 C 0.09 2.69 6.68 22.50 0.15 2.84 16 14 O -0.50 -11.87 12.77 -92.46 -1.18 -13.05 16 15 C -0.10 -3.44 5.01 -19.77 -0.10 -3.54 16 16 C 0.12 3.09 3.02 44.32 0.13 3.23 16 17 H 0.06 1.63 7.91 -2.39 -0.02 1.61 16 18 C -0.11 -2.34 6.54 31.49 0.21 -2.14 16 19 C -0.12 -2.18 7.00 31.49 0.22 -1.96 16 20 C 0.03 0.70 7.48 86.40 0.65 1.35 16 21 N -0.68 -18.58 5.90 -482.10 -2.85 -21.42 16 22 C -0.09 -3.82 9.01 22.25 0.20 -3.62 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.00 0.20 8.08 -2.39 -0.02 0.19 16 25 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 26 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.40 5.53 9.06 -74.06 -0.67 4.86 16 29 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.34 9.06 8.93 -89.69 -0.80 8.26 16 36 H 0.12 5.25 7.11 -2.91 -0.02 5.23 16 Total: -1.00 -68.82 301.87 0.54 -68.28 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.39 Total: 18.92 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 2.64 Total: -43.19 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.56 Total: -78.29 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -1.18 Total: -13.05 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.82 0.54 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072202124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.542 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds