Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00106 * 2 1 4 4 H 1.48499 * 109.46996 * 270.00412 * 3 2 1 5 5 H 1.48502 * 109.46949 * 30.00609 * 3 2 1 6 6 H 1.48505 * 109.46807 * 150.00227 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00226 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.94453 * 270.01729 * 10 9 7 12 12 C 1.38119 * 120.05888 * 179.97438 * 11 10 9 13 13 C 1.38760 * 119.94085 * 359.81934 * 12 11 10 14 14 O 1.35896 * 120.05259 * 180.23408 * 13 12 11 15 15 C 1.38710 * 119.88612 * 0.43692 * 13 12 11 16 16 C 1.50704 * 120.02482 * 179.79521 * 15 13 12 17 17 H 1.08997 * 110.42122 * 325.58129 * 16 15 13 18 18 C 1.54906 * 110.37523 * 87.89442 * 16 15 13 19 19 C 1.55141 * 101.65274 * 155.89649 * 18 16 15 20 20 C 1.54311 * 103.01761 * 324.34936 * 19 18 16 21 21 N 1.47440 * 107.23978 * 22.28190 * 20 19 18 22 22 C 1.38167 * 119.94371 * 359.51516 * 15 13 12 23 23 H 0.96998 * 119.99716 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47110 * 59.99620 * 9 7 2 25 25 H 1.08998 * 109.47203 * 299.99849 * 9 7 2 26 26 H 1.08008 * 119.97343 * 359.97438 * 11 10 9 27 27 H 1.08001 * 120.02917 * 180.02562 * 12 11 10 28 28 H 0.96704 * 113.99386 * 270.20242 * 14 13 12 29 29 H 1.09007 * 110.98938 * 37.80277 * 18 16 15 30 30 H 1.09004 * 111.02376 * 274.00952 * 18 16 15 31 31 H 1.09003 * 110.70280 * 205.96238 * 19 18 16 32 32 H 1.09002 * 110.84720 * 82.80145 * 19 18 16 33 33 H 1.09007 * 109.88857 * 262.87562 * 20 19 18 34 34 H 1.09002 * 109.88684 * 141.69047 * 20 19 18 35 35 H 1.00901 * 111.00072 * 123.25293 * 21 20 19 36 36 H 1.08003 * 119.96650 * 180.25462 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2440 -3.2656 1.1973 12 6 4.7038 -4.5680 1.2002 13 6 4.9312 -5.2248 -0.0008 14 8 5.3791 -6.5078 -0.0006 15 6 4.7047 -4.5681 -1.2014 16 6 4.9550 -5.2770 -2.5076 17 1 5.8032 -5.9553 -2.4156 18 6 3.6897 -6.0526 -2.9514 19 6 3.9023 -6.1474 -4.4853 20 6 4.5760 -4.8017 -4.8266 21 7 5.1950 -4.2962 -3.5876 22 6 4.2437 -3.2656 -1.1988 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8746 -0.6801 -0.8911 26 1 4.0641 -2.7549 2.1319 27 1 4.8830 -5.0758 2.1363 28 1 6.3428 -6.5879 0.0013 29 1 2.7852 -5.4914 -2.7164 30 1 3.6601 -7.0440 -2.4992 31 1 2.9470 -6.2421 -5.0016 32 1 4.5583 -6.9812 -4.7352 33 1 3.8288 -4.0929 -5.1837 34 1 5.3409 -4.9527 -5.5884 35 1 6.1826 -4.1348 -3.7165 36 1 4.0633 -2.7553 -2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072202125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = -25.413245 kcal Electronic energy + Delta-G solvation = -17718.263212 eV Core-core repulsion = 14973.762681 eV Total energy + Delta-G solvation = -2744.500532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76590 -37.86903 -36.48705 -33.06843 -31.52216 -30.75106 -30.11572 -27.76340 -26.74063 -22.83307 -22.67789 -21.01726 -20.75741 -19.38000 -17.95765 -16.76718 -16.72842 -15.65977 -15.14598 -14.90264 -14.39388 -13.93104 -13.38957 -13.15837 -13.12798 -12.54003 -12.32752 -11.97610 -11.92323 -11.87028 -11.70984 -11.22369 -11.19848 -10.98471 -10.71790 -10.45677 -9.98184 -9.93215 -9.84176 -9.33131 -8.54682 -8.41709 -8.14871 -7.63054 -6.03720 -4.02352 1.87393 1.99954 3.31533 3.38811 3.41755 4.16188 4.29061 4.44750 4.60292 4.70356 4.88240 5.02197 5.26992 5.29004 5.33388 5.52245 5.55013 5.67667 5.83901 5.87433 5.98908 6.07077 6.15183 6.23514 6.34917 6.46048 6.58461 6.82165 6.98302 7.02756 7.05826 7.18930 7.43579 7.48670 7.65310 7.73675 8.01601 8.53843 9.02128 9.56695 11.09371 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.006588 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.349598 B = 4249.376120 C = 4989.847819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.016 3.984 10 C -0.041 4.041 11 C -0.109 4.109 12 C -0.148 4.148 13 C 0.072 3.928 14 O -0.500 6.500 15 C -0.104 4.104 16 C 0.129 3.871 17 H 0.054 0.946 18 C -0.117 4.117 19 C -0.144 4.144 20 C 0.049 3.951 21 N -0.677 5.677 22 C -0.076 4.076 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.024 0.976 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.374 0.626 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.338 0.662 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 -11.058 -5.635 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.021 4.021 10 C -0.041 4.041 11 C -0.127 4.127 12 C -0.166 4.166 13 C 0.027 3.973 14 O -0.308 6.308 15 C -0.105 4.105 16 C 0.020 3.980 17 H 0.072 0.928 18 C -0.155 4.155 19 C -0.182 4.182 20 C -0.081 4.081 21 N -0.306 5.306 22 C -0.095 4.095 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.228 0.772 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.683 -10.637 -5.480 16.723 hybrid contribution 1.377 0.250 -0.176 1.411 sum 13.060 -10.387 -5.656 17.620 Atomic orbital electron populations 1.69905 1.06257 1.26893 1.50899 1.24995 0.94723 0.98978 0.94556 0.86810 0.80383 0.83706 0.78639 1.20150 1.21320 1.18944 1.20940 0.88294 0.94630 1.50985 0.90865 1.18791 0.97401 0.88653 0.97304 1.20373 0.93341 0.98216 0.92157 1.20960 0.99409 0.93881 0.98481 1.21201 1.03447 0.95092 0.96884 1.18124 1.03252 0.83919 0.91965 1.84860 1.25919 1.23407 1.96608 1.19858 1.03134 0.94876 0.92637 1.20938 0.97085 0.90800 0.89181 0.92777 1.22700 0.98272 1.00345 0.94166 1.22813 1.01187 0.97365 0.96860 1.22579 0.98551 0.95383 0.91539 1.61612 1.18542 1.45680 1.04805 1.20908 0.96957 0.93033 0.98572 0.92661 0.95533 0.95734 0.86112 0.86487 0.77231 0.90136 0.90689 0.90744 0.91822 0.90518 0.93351 0.84647 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.70 9.65 -34.44 -0.33 -15.03 16 8 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 9 C 0.02 0.38 4.17 -29.03 -0.12 0.26 16 10 C -0.04 -0.87 5.07 -104.60 -0.53 -1.41 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.15 -2.52 9.99 -39.43 -0.39 -2.91 16 13 C 0.07 1.18 6.68 -39.21 -0.26 0.92 16 14 O -0.50 -6.86 12.66 -19.41 -0.25 -7.11 16 15 C -0.10 -1.76 5.10 -104.47 -0.53 -2.29 16 16 C 0.13 1.80 3.20 -67.34 -0.22 1.58 16 17 H 0.05 0.67 7.72 -51.93 -0.40 0.27 16 18 C -0.12 -1.59 6.48 -24.59 -0.16 -1.75 16 19 C -0.14 -1.58 6.94 -24.91 -0.17 -1.75 16 20 C 0.05 0.55 7.58 -2.84 -0.02 0.53 16 21 N -0.68 -8.87 5.80 -105.05 -0.61 -9.48 16 22 C -0.08 -1.51 9.00 -39.61 -0.36 -1.86 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.03 0.63 7.14 -51.93 -0.37 0.26 16 25 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 26 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 27 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.37 3.32 9.06 45.56 0.41 3.73 16 29 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.34 3.76 8.91 -39.29 -0.35 3.41 16 36 H 0.14 2.75 7.26 -52.48 -0.38 2.37 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -32.02 298.46 -8.28 -40.30 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.44 Total: 6.31 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.58 Total: -24.32 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.16 Total: -36.61 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.25 Total: -7.11 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.02 -8.28 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072202125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.887 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds