Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00106 * 2 1 4 4 H 1.48499 * 109.46996 * 270.00412 * 3 2 1 5 5 H 1.48502 * 109.46949 * 30.00609 * 3 2 1 6 6 H 1.48505 * 109.46807 * 150.00227 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00226 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.38286 * 119.94453 * 270.01729 * 10 9 7 12 12 C 1.38119 * 120.05888 * 179.97438 * 11 10 9 13 13 C 1.38760 * 119.94085 * 359.81934 * 12 11 10 14 14 O 1.35896 * 120.05259 * 180.23408 * 13 12 11 15 15 C 1.38710 * 119.88612 * 0.43692 * 13 12 11 16 16 C 1.50704 * 120.02482 * 179.79521 * 15 13 12 17 17 H 1.08997 * 110.42122 * 325.58129 * 16 15 13 18 18 C 1.54906 * 110.37523 * 87.89442 * 16 15 13 19 19 C 1.55141 * 101.65274 * 155.89649 * 18 16 15 20 20 C 1.54311 * 103.01761 * 324.34936 * 19 18 16 21 21 N 1.47440 * 107.23978 * 22.28190 * 20 19 18 22 22 C 1.38167 * 119.94371 * 359.51516 * 15 13 12 23 23 H 0.96998 * 119.99716 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47110 * 59.99620 * 9 7 2 25 25 H 1.08998 * 109.47203 * 299.99849 * 9 7 2 26 26 H 1.08008 * 119.97343 * 359.97438 * 11 10 9 27 27 H 1.08001 * 120.02917 * 180.02562 * 12 11 10 28 28 H 0.96704 * 113.99386 * 270.20242 * 14 13 12 29 29 H 1.09007 * 110.98938 * 37.80277 * 18 16 15 30 30 H 1.09004 * 111.02376 * 274.00952 * 18 16 15 31 31 H 1.09003 * 110.70280 * 205.96238 * 19 18 16 32 32 H 1.09002 * 110.84720 * 82.80145 * 19 18 16 33 33 H 1.09007 * 109.88857 * 262.87562 * 20 19 18 34 34 H 1.09002 * 109.88684 * 141.69047 * 20 19 18 35 35 H 1.00901 * 111.00072 * 123.25293 * 21 20 19 36 36 H 1.08003 * 119.96650 * 180.25462 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2440 -3.2656 1.1973 12 6 4.7038 -4.5680 1.2002 13 6 4.9312 -5.2248 -0.0008 14 8 5.3791 -6.5078 -0.0006 15 6 4.7047 -4.5681 -1.2014 16 6 4.9550 -5.2770 -2.5076 17 1 5.8032 -5.9553 -2.4156 18 6 3.6897 -6.0526 -2.9514 19 6 3.9023 -6.1474 -4.4853 20 6 4.5760 -4.8017 -4.8266 21 7 5.1950 -4.2962 -3.5876 22 6 4.2437 -3.2656 -1.1988 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8746 -0.6801 -0.8911 26 1 4.0641 -2.7549 2.1319 27 1 4.8830 -5.0758 2.1363 28 1 6.3428 -6.5879 0.0013 29 1 2.7852 -5.4914 -2.7164 30 1 3.6601 -7.0440 -2.4992 31 1 2.9470 -6.2421 -5.0016 32 1 4.5583 -6.9812 -4.7352 33 1 3.8288 -4.0929 -5.1837 34 1 5.3409 -4.9527 -5.5884 35 1 6.1826 -4.1348 -3.7165 36 1 4.0633 -2.7553 -2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072202125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = -48.356134 kcal Electronic energy + Delta-G solvation = -17719.258091 eV Core-core repulsion = 14973.762681 eV Total energy + Delta-G solvation = -2745.495410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04394 -38.95085 -37.82619 -35.11303 -32.98639 -32.37203 -31.12806 -29.21567 -28.24277 -24.70407 -23.96911 -22.25613 -21.90130 -20.71367 -19.18915 -18.96663 -17.81600 -16.95507 -16.47813 -16.20041 -16.12086 -15.46843 -14.73519 -14.42008 -14.40835 -14.24724 -13.67879 -13.53426 -13.49377 -13.21203 -12.91490 -12.79657 -12.35507 -12.24108 -12.11823 -11.83590 -11.78723 -11.59169 -11.50395 -11.14819 -10.78530 -9.61921 -9.32413 -9.12087 -8.29633 -6.34615 0.46545 0.56720 1.36458 1.38130 1.50353 2.35714 2.83528 3.04644 3.21212 3.40063 3.69794 3.89346 4.10073 4.14157 4.19696 4.22564 4.38203 4.58488 4.65261 4.74917 4.80877 4.93963 4.97395 5.00266 5.05346 5.12669 5.17442 5.32061 5.37293 5.52850 5.57457 5.61445 5.94026 6.07248 6.11088 6.28000 6.54903 6.71181 6.95877 7.28619 8.87236 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.006588 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.349598 B = 4249.376120 C = 4989.847819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.519 4.519 8 H 0.023 0.977 9 C 0.024 3.976 10 C -0.077 4.077 11 C -0.121 4.121 12 C -0.147 4.147 13 C 0.088 3.912 14 O -0.497 6.497 15 C -0.105 4.105 16 C 0.133 3.867 17 H 0.081 0.919 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.047 3.953 21 N -0.696 5.696 22 C -0.088 4.088 23 H 0.267 0.733 24 H 0.032 0.968 25 H 0.027 0.973 26 H 0.122 0.878 27 H 0.145 0.855 28 H 0.402 0.598 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.350 0.650 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 -12.110 -6.097 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.557 4.557 8 H 0.042 0.958 9 C -0.014 4.014 10 C -0.077 4.077 11 C -0.139 4.139 12 C -0.165 4.165 13 C 0.043 3.957 14 O -0.309 6.309 15 C -0.106 4.106 16 C 0.023 3.977 17 H 0.099 0.901 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.081 4.081 21 N -0.327 5.327 22 C -0.106 4.106 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.140 0.860 27 H 0.163 0.837 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.431 -11.711 -5.947 19.513 hybrid contribution 0.521 0.386 -0.040 0.650 sum 14.952 -11.325 -5.987 19.689 Atomic orbital electron populations 1.70067 1.08344 1.28253 1.52421 1.26002 0.95624 1.03433 0.93927 0.85633 0.79551 0.77994 0.79358 1.19062 1.20673 1.16783 1.21163 0.90925 0.92871 1.50729 0.95812 1.18614 0.94155 0.91218 0.97370 1.20244 0.96251 0.97370 0.93851 1.21035 1.00023 0.95146 0.97739 1.21460 1.02390 0.94162 0.98503 1.18135 1.01689 0.84465 0.91382 1.84792 1.28475 1.21244 1.96407 1.20166 1.01772 0.93887 0.94753 1.20954 0.97921 0.90878 0.87921 0.90150 1.22675 0.96678 1.00020 0.96557 1.22793 1.01973 0.97961 0.94543 1.22599 0.98951 0.95104 0.91480 1.61472 1.19666 1.46143 1.05395 1.20806 0.98022 0.94465 0.97311 0.92367 0.95006 0.95480 0.86001 0.83737 0.73980 0.93741 0.89918 0.90389 0.89330 0.92226 0.90537 0.83312 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.76 16 2 C 0.01 0.41 5.47 84.65 0.46 0.88 16 3 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.52 -31.26 9.65 25.60 0.25 -31.02 16 8 H 0.02 1.61 7.98 -2.91 -0.02 1.58 16 9 C 0.02 1.17 4.17 29.10 0.12 1.29 16 10 C -0.08 -3.39 5.07 -19.85 -0.10 -3.49 16 11 C -0.12 -4.71 9.69 22.25 0.22 -4.49 16 12 C -0.15 -4.75 9.99 22.37 0.22 -4.53 16 13 C 0.09 2.69 6.68 22.51 0.15 2.84 16 14 O -0.50 -11.71 12.66 -92.38 -1.17 -12.88 16 15 C -0.10 -3.44 5.10 -19.77 -0.10 -3.54 16 16 C 0.13 3.42 3.20 44.64 0.14 3.56 16 17 H 0.08 1.68 7.72 -2.39 -0.02 1.66 16 18 C -0.12 -3.16 6.48 31.98 0.21 -2.95 16 19 C -0.13 -2.64 6.94 31.77 0.22 -2.42 16 20 C 0.05 0.99 7.58 86.64 0.66 1.65 16 21 N -0.70 -17.19 5.80 -486.28 -2.82 -20.02 16 22 C -0.09 -3.53 9.00 22.25 0.20 -3.33 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.03 1.52 7.14 -2.39 -0.02 1.50 16 25 H 0.03 1.30 7.51 -2.39 -0.02 1.29 16 26 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.40 5.18 9.06 -74.05 -0.67 4.51 16 29 H 0.04 1.46 8.05 -2.38 -0.02 1.44 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.35 7.01 8.91 -89.69 -0.80 6.21 16 36 H 0.12 5.08 7.26 -2.91 -0.02 5.06 16 Total: -1.00 -72.26 298.46 0.40 -71.86 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.44 Total: 20.50 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 2.65 Total: -45.55 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.52 Total: -80.77 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -1.17 Total: -12.88 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -72.26 0.40 -71.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072202125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.499 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds