Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46662 * 2 1 4 4 N 1.36792 * 125.03544 * 264.97057 * 3 2 1 5 5 H 0.96998 * 125.07011 * 0.06161 * 4 3 2 6 6 C 1.37785 * 109.85467 * 180.02562 * 4 3 2 7 7 C 1.40621 * 107.16047 * 0.02562 * 6 4 3 8 8 C 1.39660 * 119.94544 * 180.02562 * 7 6 4 9 9 C 1.36643 * 119.80607 * 359.72778 * 8 7 6 10 10 C 1.38791 * 120.54486 * 0.55277 * 9 8 7 11 11 C 1.37987 * 120.63787 * 359.43963 * 10 9 8 12 12 F 1.35094 * 120.13355 * 180.25890 * 11 10 9 13 13 C 1.34249 * 125.03033 * 85.01610 * 3 2 1 14 14 C 1.50703 * 126.49747 * 359.96446 * 13 3 2 15 15 C 1.50693 * 109.47073 * 89.99959 * 14 13 3 16 16 H 1.07992 * 120.00575 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99860 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99818 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47164 * 60.00158 * 19 17 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47221 * 300.00063 * 19 17 15 23 23 H 1.09000 * 109.47532 * 299.99612 * 1 2 3 24 24 H 1.09004 * 109.47057 * 60.00185 * 1 2 3 25 25 H 1.09009 * 109.46724 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47532 * 240.00388 * 2 1 3 27 27 H 1.09004 * 109.47057 * 119.99815 * 2 1 3 28 28 H 1.08000 * 120.09836 * 180.02562 * 8 7 6 29 29 H 1.07997 * 119.72828 * 180.27148 * 9 8 7 30 30 H 1.08002 * 119.68415 * 179.72176 * 10 9 8 31 31 H 1.08994 * 109.46971 * 209.99924 * 14 13 3 32 32 H 1.08999 * 109.46617 * 329.99955 * 14 13 3 33 33 H 0.96998 * 119.99933 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3865 2.1286 -1.1157 5 1 2.3511 1.7910 -2.0244 6 6 2.8004 3.3927 -0.7563 7 6 2.7013 3.4792 0.6438 8 6 3.0585 4.6613 1.2962 9 6 3.5085 5.7282 0.5707 10 6 3.6032 5.6515 -0.8118 11 6 3.2559 4.4937 -1.4773 12 9 3.3571 4.4286 -2.8229 13 6 2.1990 2.1793 1.0951 14 6 1.9221 1.7707 2.5191 15 6 3.1639 1.1622 3.1176 16 1 4.0636 1.0791 2.5261 17 6 3.1513 0.7104 4.4202 18 7 2.0552 0.8102 5.1402 19 14 4.6905 -0.0446 5.1620 20 1 5.7913 0.9519 5.1386 21 1 4.4172 -0.4482 6.5648 22 1 5.0864 -1.2382 4.3722 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9838 4.7303 2.3714 29 1 3.7885 6.6402 1.0769 30 1 3.9565 6.5048 -1.3718 31 1 1.6313 2.6470 3.0984 32 1 1.1142 1.0391 2.5365 33 1 2.0463 0.4927 6.0567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074113650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -11.942916 kcal Electronic energy + Delta-G solvation = -17436.122944 eV Core-core repulsion = 14568.746225 eV Total energy + Delta-G solvation = -2867.376719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.57132 -40.77611 -36.72791 -33.70443 -32.73798 -31.33263 -29.16677 -28.46611 -26.61299 -23.72643 -22.96579 -21.88411 -20.72884 -18.46261 -17.48133 -16.64203 -16.20862 -15.48605 -15.41570 -14.89877 -14.45654 -14.36923 -13.87648 -13.57209 -12.94014 -12.66049 -12.30943 -11.93496 -11.85215 -11.52614 -11.28279 -11.13031 -10.99812 -10.90830 -10.68587 -10.62658 -10.15407 -9.73200 -9.46924 -8.72181 -8.37127 -7.78393 -6.90900 -5.98253 -4.02194 1.40649 1.91370 3.25592 3.33695 3.38198 3.42900 3.46777 4.23615 4.48999 4.60390 5.07775 5.17995 5.29609 5.34777 5.46066 5.69147 5.72032 5.74212 5.85622 6.04460 6.13182 6.28649 6.45231 6.48884 6.56928 6.60717 6.71216 6.96581 7.26033 7.37013 7.52258 7.65235 7.86641 7.96987 8.03246 8.41488 9.02983 9.61271 11.09946 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.007438 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.214919 B = 3763.794630 C = 4563.311648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C 0.053 3.947 4 N -0.592 5.592 5 H 0.408 0.592 6 C 0.062 3.938 7 C -0.076 4.076 8 C -0.059 4.059 9 C -0.141 4.141 10 C -0.140 4.140 11 C 0.069 3.931 12 F -0.154 7.154 13 C -0.103 4.103 14 C 0.083 3.917 15 C -0.506 4.506 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 4.050 -10.988 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.052 4.052 4 N -0.195 5.195 5 H 0.244 0.756 6 C -0.047 4.047 7 C -0.082 4.082 8 C -0.078 4.078 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.047 3.953 12 F -0.133 7.133 13 C -0.109 4.109 14 C 0.045 3.955 15 C -0.545 4.545 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.641 3.900 -10.954 11.645 hybrid contribution 0.982 -0.516 -0.329 1.157 sum 0.341 3.384 -11.283 11.784 Atomic orbital electron populations 1.21736 0.94885 1.01416 1.02157 1.20136 0.95816 0.89883 1.03486 1.20101 1.05115 0.94938 0.85043 1.41539 1.59097 1.10323 1.08531 0.75634 1.18128 1.05118 0.86607 0.94823 1.19189 1.03270 0.95530 0.90190 1.20486 0.95930 0.90895 1.00442 1.20354 1.03904 0.99236 0.92582 1.20643 1.04124 0.95905 0.95293 1.16632 1.08642 0.94147 0.75838 1.91406 1.94758 1.96975 1.30121 1.21026 1.02619 0.90301 0.96976 1.17723 0.96963 0.96577 0.84199 1.21066 0.97272 1.39238 0.96914 0.92764 1.24979 0.96009 0.96114 0.97116 1.69941 1.26888 1.47342 1.09301 0.86681 0.83659 0.79719 0.78114 1.20244 1.21312 1.20325 0.91494 0.93629 0.92514 0.92213 0.88045 0.85080 0.85649 0.85374 0.95512 0.95201 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.89 37.16 0.37 -1.71 16 2 C -0.06 -0.89 5.95 -27.88 -0.17 -1.05 16 3 C 0.05 0.99 6.33 -81.78 -0.52 0.47 16 4 N -0.59 -10.05 6.07 -6.91 -0.04 -10.09 16 5 H 0.41 5.62 8.96 -40.82 -0.37 5.25 16 6 C 0.06 1.15 7.26 -83.91 -0.61 0.54 16 7 C -0.08 -1.55 6.35 -105.14 -0.67 -2.22 16 8 C -0.06 -1.08 10.05 -39.63 -0.40 -1.48 16 9 C -0.14 -2.15 9.97 -39.95 -0.40 -2.55 16 10 C -0.14 -2.10 9.99 -39.47 -0.39 -2.49 16 11 C 0.07 1.17 7.32 -39.29 -0.29 0.88 16 12 F -0.15 -2.47 17.27 2.25 0.04 -2.43 16 13 C -0.10 -2.26 5.50 -102.70 -0.57 -2.82 16 14 C 0.08 2.08 5.11 -29.04 -0.15 1.93 16 15 C -0.51 -13.85 9.09 -34.44 -0.31 -14.17 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.84 7.92 -51.93 -0.41 1.43 16 28 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 290.46 15.07 4.38 4.38 Total: -1.00 -29.67 290.46 -8.16 -37.84 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.06 Total: 2.27 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -4.20 Total: -23.13 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.69 Total: -35.20 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.67 -8.16 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.894 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds