Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46662 * 2 1 4 4 N 1.36792 * 125.03544 * 264.97057 * 3 2 1 5 5 H 0.96998 * 125.07011 * 0.06161 * 4 3 2 6 6 C 1.37785 * 109.85467 * 180.02562 * 4 3 2 7 7 C 1.40621 * 107.16047 * 0.02562 * 6 4 3 8 8 C 1.39660 * 119.94544 * 180.02562 * 7 6 4 9 9 C 1.36643 * 119.80607 * 359.72778 * 8 7 6 10 10 C 1.38791 * 120.54486 * 0.55277 * 9 8 7 11 11 C 1.37987 * 120.63787 * 359.43963 * 10 9 8 12 12 F 1.35094 * 120.13355 * 180.25890 * 11 10 9 13 13 C 1.34249 * 125.03033 * 85.01610 * 3 2 1 14 14 C 1.50703 * 126.49747 * 359.96446 * 13 3 2 15 15 C 1.50693 * 109.47073 * 89.99959 * 14 13 3 16 16 H 1.07992 * 120.00575 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99860 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99818 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47164 * 60.00158 * 19 17 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47221 * 300.00063 * 19 17 15 23 23 H 1.09000 * 109.47532 * 299.99612 * 1 2 3 24 24 H 1.09004 * 109.47057 * 60.00185 * 1 2 3 25 25 H 1.09009 * 109.46724 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47532 * 240.00388 * 2 1 3 27 27 H 1.09004 * 109.47057 * 119.99815 * 2 1 3 28 28 H 1.08000 * 120.09836 * 180.02562 * 8 7 6 29 29 H 1.07997 * 119.72828 * 180.27148 * 9 8 7 30 30 H 1.08002 * 119.68415 * 179.72176 * 10 9 8 31 31 H 1.08994 * 109.46971 * 209.99924 * 14 13 3 32 32 H 1.08999 * 109.46617 * 329.99955 * 14 13 3 33 33 H 0.96998 * 119.99933 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3865 2.1286 -1.1157 5 1 2.3511 1.7910 -2.0244 6 6 2.8004 3.3927 -0.7563 7 6 2.7013 3.4792 0.6438 8 6 3.0585 4.6613 1.2962 9 6 3.5085 5.7282 0.5707 10 6 3.6032 5.6515 -0.8118 11 6 3.2559 4.4937 -1.4773 12 9 3.3571 4.4286 -2.8229 13 6 2.1990 2.1793 1.0951 14 6 1.9221 1.7707 2.5191 15 6 3.1639 1.1622 3.1176 16 1 4.0636 1.0791 2.5261 17 6 3.1513 0.7104 4.4202 18 7 2.0552 0.8102 5.1402 19 14 4.6905 -0.0446 5.1620 20 1 5.7913 0.9519 5.1386 21 1 4.4172 -0.4482 6.5648 22 1 5.0864 -1.2382 4.3722 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9838 4.7303 2.3714 29 1 3.7885 6.6402 1.0769 30 1 3.9565 6.5048 -1.3718 31 1 1.6313 2.6470 3.0984 32 1 1.1142 1.0391 2.5365 33 1 2.0463 0.4927 6.0567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074113650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -27.769463 kcal Electronic energy + Delta-G solvation = -17436.809235 eV Core-core repulsion = 14568.746225 eV Total energy + Delta-G solvation = -2868.063010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.84935 -42.19798 -38.06156 -35.55790 -34.24577 -32.97187 -30.67349 -29.87854 -28.33520 -25.23273 -24.73673 -23.21776 -22.10202 -19.96831 -18.90971 -18.37683 -17.96632 -16.78128 -16.71929 -16.47279 -16.24891 -15.65079 -15.24937 -14.92247 -14.33090 -14.23063 -13.96408 -13.71266 -13.32411 -13.16443 -12.70349 -12.65955 -12.54354 -12.37484 -12.27915 -12.07357 -11.71834 -11.60364 -11.51598 -10.52162 -10.22241 -9.14885 -8.45820 -8.05326 -6.23638 0.04639 0.58102 1.41288 1.43425 1.51257 1.76755 2.11282 2.45490 2.86103 3.17605 3.28356 3.75227 3.90210 4.04336 4.22310 4.37691 4.42117 4.47057 4.49764 4.78627 4.87004 5.01969 5.05488 5.13493 5.20840 5.30305 5.33792 5.44559 5.59389 5.68727 5.83396 5.87402 6.01015 6.24262 6.32103 6.69439 6.88032 7.43907 8.96237 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.007438 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.214919 B = 3763.794630 C = 4563.311648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C 0.073 3.927 4 N -0.580 5.580 5 H 0.425 0.575 6 C 0.050 3.950 7 C -0.105 4.105 8 C -0.089 4.089 9 C -0.121 4.121 10 C -0.128 4.128 11 C 0.066 3.934 12 F -0.147 7.147 13 C -0.157 4.157 14 C 0.100 3.900 15 C -0.518 4.518 16 H 0.046 0.954 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.269 1.269 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.163 0.837 30 H 0.168 0.832 31 H -0.006 1.006 32 H 0.011 0.989 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 4.593 -12.955 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.034 4.034 4 N -0.184 5.184 5 H 0.264 0.736 6 C -0.059 4.059 7 C -0.111 4.111 8 C -0.108 4.108 9 C -0.140 4.140 10 C -0.147 4.147 11 C 0.044 3.956 12 F -0.126 7.126 13 C -0.164 4.164 14 C 0.063 3.937 15 C -0.556 4.556 16 H 0.064 0.936 17 C -0.189 4.189 18 N -0.569 5.569 19 Si 0.780 3.220 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.194 1.194 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.135 0.865 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.012 0.988 32 H 0.029 0.971 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.575 4.451 -12.958 13.714 hybrid contribution 0.594 -0.601 0.218 0.872 sum 1.168 3.850 -12.740 13.361 Atomic orbital electron populations 1.21678 0.93467 1.02819 1.01568 1.20209 0.96984 0.88310 1.03844 1.20317 1.02747 0.95512 0.84848 1.41442 1.58327 1.09810 1.08864 0.73588 1.18289 1.05773 0.87568 0.94255 1.19378 1.04429 0.95673 0.91575 1.20608 0.98055 0.91827 1.00272 1.20737 1.01242 0.99203 0.92850 1.21109 1.02136 0.96276 0.95213 1.16788 1.08483 0.94120 0.76167 1.91425 1.94685 1.96956 1.29529 1.20745 1.06929 0.92644 0.96033 1.17312 0.95548 0.94380 0.86462 1.21318 0.97692 1.39290 0.97303 0.93586 1.25793 0.99074 0.96503 0.97511 1.70063 1.28917 1.48280 1.09643 0.85653 0.79805 0.79048 0.77474 1.19789 1.20591 1.19358 0.94318 0.91911 0.90134 0.88682 0.90726 0.86475 0.81991 0.81438 0.98789 0.97112 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.89 71.98 0.71 -3.17 16 2 C -0.06 -1.76 5.95 29.85 0.18 -1.58 16 3 C 0.07 2.74 6.33 40.88 0.26 3.00 16 4 N -0.58 -19.04 6.07 -175.78 -1.07 -20.10 16 5 H 0.43 10.76 8.96 -92.71 -0.83 9.92 16 6 C 0.05 1.80 7.26 39.04 0.28 2.08 16 7 C -0.11 -4.38 6.35 -20.20 -0.13 -4.51 16 8 C -0.09 -3.30 10.05 22.24 0.22 -3.08 16 9 C -0.12 -3.40 9.97 22.03 0.22 -3.18 16 10 C -0.13 -3.37 9.99 22.34 0.22 -3.15 16 11 C 0.07 2.07 7.32 22.46 0.16 2.23 16 12 F -0.15 -4.26 17.27 44.97 0.78 -3.49 16 13 C -0.16 -7.19 5.50 -18.62 -0.10 -7.29 16 14 C 0.10 5.40 5.11 29.10 0.15 5.55 16 15 C -0.52 -29.59 9.09 25.60 0.23 -29.36 16 16 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 17 C 0.01 0.52 5.46 84.65 0.46 0.98 16 18 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 19 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H 0.04 1.29 7.67 -2.39 -0.02 1.27 16 24 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.80 7.92 -2.38 -0.02 2.78 16 28 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -66.55 290.46 5.19 -61.36 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.29 Total: 12.58 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.88 Total: -41.47 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -0.78 Total: -75.33 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.55 5.19 -61.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.594 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds