Wall clock time and date at job start Mon Mar 30 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47327 * 2 1 4 4 N 1.32548 * 126.17985 * 93.50197 * 3 2 1 5 5 C 1.33053 * 108.98243 * 179.97438 * 4 3 2 6 6 C 1.39339 * 125.53620 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99691 * 359.97438 * 6 5 4 8 8 C 1.40261 * 119.99907 * 180.02562 * 6 5 4 9 9 N 1.30686 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99480 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46748 * 180.02562 * 10 8 6 12 12 H 1.48492 * 109.47182 * 299.99805 * 10 8 6 13 13 H 1.48492 * 109.47034 * 60.00377 * 10 8 6 14 14 O 1.35025 * 108.93203 * 0.23299 * 5 4 3 15 15 C 1.35113 * 107.58947 * 359.62756 * 14 5 4 16 16 C 1.47153 * 126.56996 * 180.13014 * 15 14 5 17 17 C 1.38403 * 126.43729 * 133.05307 * 16 15 14 18 18 N 1.34583 * 107.31755 * 179.83675 * 17 16 15 19 19 H 0.97000 * 125.75986 * 180.12031 * 18 17 16 20 20 N 1.39930 * 108.48396 * 0.43195 * 18 17 16 21 21 C 1.30448 * 108.99646 * 359.72417 * 20 18 17 22 22 C 1.50705 * 125.95719 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46855 * 299.99376 * 1 2 3 25 25 H 1.08991 * 109.47173 * 59.99825 * 1 2 3 26 26 H 1.09004 * 109.46648 * 240.00193 * 2 1 3 27 27 H 1.09003 * 109.46805 * 120.00461 * 2 1 3 28 28 H 0.96998 * 120.00267 * 180.02562 * 9 8 6 29 29 H 1.07999 * 126.34555 * 359.97438 * 17 16 15 30 30 H 1.09004 * 109.47072 * 270.04330 * 22 21 20 31 31 H 1.09005 * 109.47176 * 30.04261 * 22 21 20 32 32 H 1.09000 * 109.47008 * 150.04119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3548 2.1367 1.0679 5 6 2.7564 3.3428 0.6752 6 6 3.1744 4.3712 1.5174 7 1 3.1894 4.2209 2.5867 8 6 3.5745 5.6018 0.9763 9 7 3.5559 5.7838 -0.3177 10 14 4.1342 6.9807 2.1055 11 1 4.5009 8.1681 1.2926 12 1 3.0318 7.3384 3.0339 13 1 5.3140 6.5320 2.8875 14 8 2.6878 3.4104 -0.6716 15 6 2.2415 2.2159 -1.1182 16 6 2.0152 1.8332 -2.5210 17 6 2.4295 0.6618 -3.1306 18 7 2.0167 0.7086 -4.4107 19 1 2.1635 0.0213 -5.0791 20 7 1.3461 1.9194 -4.6165 21 6 1.3388 2.5957 -3.5011 22 6 0.7184 3.9534 -3.2935 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.8330 6.6347 -0.6919 29 1 2.9801 -0.1421 -2.6648 30 1 1.4558 4.7267 -3.5088 31 1 -0.1350 4.0690 -3.9618 32 1 0.3855 4.0464 -2.2597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074113765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:40 Heat of formation + Delta-G solvation = 62.093944 kcal Electronic energy + Delta-G solvation = -17768.015316 eV Core-core repulsion = 14923.769037 eV Total energy + Delta-G solvation = -2844.246279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97110 -40.27703 -34.27152 -33.58201 -32.52722 -31.56173 -30.08947 -28.17783 -27.40198 -25.05726 -23.27438 -21.09183 -20.41719 -19.18153 -18.95878 -17.50246 -17.15901 -15.23992 -14.72553 -14.39844 -14.22549 -13.83044 -13.64785 -13.44221 -13.02091 -12.34789 -12.26667 -12.18154 -11.69174 -11.56329 -11.51931 -11.32335 -10.90995 -10.77826 -10.43732 -10.30190 -10.12537 -9.59410 -9.17869 -8.92726 -8.69843 -8.23377 -6.95237 -6.91809 -4.59730 2.20750 2.76760 3.01292 3.02060 3.05538 3.24218 3.62398 3.83064 4.14947 4.78444 5.22140 5.26283 5.42134 5.58617 5.65207 5.75477 6.01646 6.17867 6.21008 6.21097 6.32514 6.34632 6.43977 6.51416 6.68000 6.76763 6.97726 7.07770 7.21029 7.65314 7.76940 7.95984 8.13569 8.23144 8.51647 8.69687 9.86834 10.09361 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.007735 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.521172 B = 3619.209372 C = 4417.291490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C 0.043 3.957 4 N -0.606 5.606 5 C 0.347 3.653 6 C -0.425 4.425 7 H 0.109 0.891 8 C 0.070 3.930 9 N -0.769 5.769 10 Si 0.930 3.070 11 H -0.276 1.276 12 H -0.261 1.261 13 H -0.262 1.262 14 O -0.172 6.172 15 C -0.130 4.130 16 C -0.099 4.099 17 C 0.043 3.957 18 N -0.480 5.480 19 H 0.435 0.565 20 N -0.312 5.312 21 C 0.091 3.909 22 C -0.065 4.065 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.287 0.713 29 H 0.174 0.826 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -5.157 -4.624 7.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.086 4.086 4 N -0.338 5.338 5 C 0.164 3.836 6 C -0.460 4.460 7 H 0.127 0.873 8 C -0.154 4.154 9 N -0.396 5.396 10 Si 0.753 3.247 11 H -0.201 1.201 12 H -0.185 1.185 13 H -0.186 1.186 14 O -0.064 6.064 15 C -0.187 4.187 16 C -0.111 4.111 17 C -0.104 4.104 18 N -0.187 5.187 19 H 0.278 0.722 20 N -0.136 5.136 21 C -0.075 4.075 22 C -0.124 4.124 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.191 0.809 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.406 -5.137 -5.339 7.791 hybrid contribution 0.763 0.407 0.154 0.878 sum -1.644 -4.730 -5.185 7.209 Atomic orbital electron populations 1.21648 0.95641 1.00218 1.02100 1.19673 0.95147 0.91186 1.01071 1.21609 1.01865 0.96188 0.88930 1.70673 1.29208 1.04524 1.29411 1.21882 0.91871 0.91734 0.78077 1.18286 1.39914 0.93531 0.94279 0.87268 1.26100 0.93398 1.00076 0.95784 1.69730 1.32162 1.25584 1.12089 0.85998 0.80080 0.78588 0.80010 1.20094 1.18546 1.18590 1.84932 1.67063 1.31234 1.23129 1.19898 1.19901 0.87905 0.91011 1.17753 1.06807 0.95075 0.91429 1.22772 1.01512 1.00894 0.85239 1.45739 1.46507 1.16991 1.09479 0.72210 1.76869 1.19612 0.94228 1.22897 1.22593 0.97381 0.97259 0.90286 1.20097 0.99619 0.89796 1.02874 0.93436 0.92637 0.93006 0.92162 0.91530 0.90227 0.80874 0.90329 0.91837 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.90 37.16 0.37 -1.95 16 2 C -0.03 -0.61 6.28 -27.89 -0.18 -0.78 16 3 C 0.04 1.03 6.45 -82.08 -0.53 0.50 16 4 N -0.61 -16.55 11.31 -9.13 -0.10 -16.65 16 5 C 0.35 9.87 7.62 -16.61 -0.13 9.74 16 6 C -0.43 -11.47 9.43 -38.41 -0.36 -11.83 16 7 H 0.11 2.80 7.85 -52.49 -0.41 2.39 16 8 C 0.07 1.72 5.50 -17.28 -0.10 1.63 16 9 N -0.77 -19.87 11.95 55.56 0.66 -19.20 16 10 Si 0.93 18.19 29.56 -169.99 -5.03 13.17 16 11 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 12 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 13 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 14 O -0.17 -4.82 9.04 1.40 0.01 -4.81 16 15 C -0.13 -3.22 6.93 -35.76 -0.25 -3.47 16 16 C -0.10 -2.08 5.87 -105.01 -0.62 -2.70 16 17 C 0.04 0.71 11.04 -16.28 -0.18 0.53 16 18 N -0.48 -7.19 7.30 30.98 0.23 -6.96 16 19 H 0.43 4.56 8.96 -182.73 -1.64 2.93 16 20 N -0.31 -5.72 12.63 33.92 0.43 -5.29 16 21 C 0.09 1.84 7.27 -81.97 -0.60 1.24 16 22 C -0.07 -1.21 10.28 36.01 0.37 -0.84 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.97 6.33 -51.93 -0.33 0.64 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 29 H 0.17 2.35 7.36 -52.49 -0.39 1.96 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.61 8.01 -51.93 -0.42 1.19 16 LS Contribution 285.33 15.07 4.30 4.30 Total: -1.00 -31.80 285.33 -6.54 -38.34 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.85 Total: 5.03 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.19 Total: -7.92 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 1.22 Total: -48.11 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.01 Total: -4.81 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.80 -6.54 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.436 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds