Wall clock time and date at job start Mon Mar 30 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47327 * 2 1 4 4 N 1.32548 * 126.17985 * 93.50197 * 3 2 1 5 5 C 1.33053 * 108.98243 * 179.97438 * 4 3 2 6 6 C 1.39339 * 125.53620 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99691 * 359.97438 * 6 5 4 8 8 C 1.40261 * 119.99907 * 180.02562 * 6 5 4 9 9 N 1.30686 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99480 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46748 * 180.02562 * 10 8 6 12 12 H 1.48492 * 109.47182 * 299.99805 * 10 8 6 13 13 H 1.48492 * 109.47034 * 60.00377 * 10 8 6 14 14 O 1.35025 * 108.93203 * 0.23299 * 5 4 3 15 15 C 1.35113 * 107.58947 * 359.62756 * 14 5 4 16 16 C 1.47153 * 126.56996 * 180.13014 * 15 14 5 17 17 C 1.38403 * 126.43729 * 133.05307 * 16 15 14 18 18 N 1.34583 * 107.31755 * 179.83675 * 17 16 15 19 19 H 0.97000 * 125.75986 * 180.12031 * 18 17 16 20 20 N 1.39930 * 108.48396 * 0.43195 * 18 17 16 21 21 C 1.30448 * 108.99646 * 359.72417 * 20 18 17 22 22 C 1.50705 * 125.95719 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46855 * 299.99376 * 1 2 3 25 25 H 1.08991 * 109.47173 * 59.99825 * 1 2 3 26 26 H 1.09004 * 109.46648 * 240.00193 * 2 1 3 27 27 H 1.09003 * 109.46805 * 120.00461 * 2 1 3 28 28 H 0.96998 * 120.00267 * 180.02562 * 9 8 6 29 29 H 1.07999 * 126.34555 * 359.97438 * 17 16 15 30 30 H 1.09004 * 109.47072 * 270.04330 * 22 21 20 31 31 H 1.09005 * 109.47176 * 30.04261 * 22 21 20 32 32 H 1.09000 * 109.47008 * 150.04119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3548 2.1367 1.0679 5 6 2.7564 3.3428 0.6752 6 6 3.1744 4.3712 1.5174 7 1 3.1894 4.2209 2.5867 8 6 3.5745 5.6018 0.9763 9 7 3.5559 5.7838 -0.3177 10 14 4.1342 6.9807 2.1055 11 1 4.5009 8.1681 1.2926 12 1 3.0318 7.3384 3.0339 13 1 5.3140 6.5320 2.8875 14 8 2.6878 3.4104 -0.6716 15 6 2.2415 2.2159 -1.1182 16 6 2.0152 1.8332 -2.5210 17 6 2.4295 0.6618 -3.1306 18 7 2.0167 0.7086 -4.4107 19 1 2.1635 0.0213 -5.0791 20 7 1.3461 1.9194 -4.6165 21 6 1.3388 2.5957 -3.5011 22 6 0.7184 3.9534 -3.2935 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.8330 6.6347 -0.6919 29 1 2.9801 -0.1421 -2.6648 30 1 1.4558 4.7267 -3.5088 31 1 -0.1350 4.0690 -3.9618 32 1 0.3855 4.0464 -2.2597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074113765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:40 Heat of formation + Delta-G solvation = 38.445842 kcal Electronic energy + Delta-G solvation = -17769.040775 eV Core-core repulsion = 14923.769037 eV Total energy + Delta-G solvation = -2845.271737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.82191 -41.81378 -36.03163 -35.45445 -34.01267 -33.32320 -31.62574 -30.01387 -28.89578 -26.81066 -24.80336 -22.87015 -22.03794 -20.94055 -20.53140 -19.23267 -18.80091 -17.06605 -16.55373 -16.11932 -15.76891 -15.31645 -15.13391 -15.06264 -14.61243 -13.89096 -13.77941 -13.71803 -13.32049 -13.20153 -13.01079 -12.93441 -12.83546 -12.23568 -11.97761 -11.76638 -11.70942 -11.43209 -11.08077 -10.62633 -10.32719 -9.92141 -8.79733 -8.74620 -6.57011 0.74978 1.08473 1.40538 1.44930 1.56194 1.89621 2.00113 2.19002 2.31865 3.01511 3.27162 3.78477 3.98417 4.05104 4.20269 4.37465 4.58561 4.61885 4.70622 4.73377 4.84421 4.91225 4.97926 5.02776 5.04878 5.12338 5.36021 5.38929 5.61979 5.92978 6.07794 6.23810 6.46193 6.58531 6.70674 6.75107 7.91028 8.24510 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.007735 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.521172 B = 3619.209372 C = 4417.291490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.030 4.030 3 C 0.025 3.975 4 N -0.634 5.634 5 C 0.311 3.689 6 C -0.460 4.460 7 H 0.110 0.890 8 C 0.029 3.971 9 N -0.804 5.804 10 Si 1.010 2.990 11 H -0.262 1.262 12 H -0.254 1.254 13 H -0.254 1.254 14 O -0.197 6.197 15 C -0.136 4.136 16 C -0.153 4.153 17 C 0.082 3.918 18 N -0.451 5.451 19 H 0.459 0.541 20 N -0.318 5.318 21 C 0.074 3.926 22 C -0.059 4.059 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.296 0.704 29 H 0.213 0.787 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -6.391 -5.587 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.102 4.102 4 N -0.367 5.367 5 C 0.127 3.873 6 C -0.494 4.494 7 H 0.128 0.872 8 C -0.191 4.191 9 N -0.431 5.431 10 Si 0.828 3.172 11 H -0.186 1.186 12 H -0.178 1.178 13 H -0.178 1.178 14 O -0.090 6.090 15 C -0.192 4.192 16 C -0.165 4.165 17 C -0.068 4.068 18 N -0.161 5.161 19 H 0.307 0.693 20 N -0.143 5.143 21 C -0.092 4.092 22 C -0.118 4.118 23 H 0.106 0.894 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.192 -6.419 -6.370 9.305 hybrid contribution 0.678 0.640 0.300 0.979 sum -1.514 -5.779 -6.070 8.517 Atomic orbital electron populations 1.21579 0.94294 1.02311 1.00560 1.19846 0.96184 0.88011 1.02714 1.22391 1.01646 0.98365 0.87838 1.70645 1.30287 1.04785 1.31012 1.22399 0.93406 0.92803 0.78648 1.18666 1.41478 0.94836 0.94438 0.87218 1.27138 0.92528 1.02015 0.97408 1.69801 1.32489 1.26783 1.14050 0.84829 0.79719 0.74920 0.77707 1.18629 1.17797 1.17813 1.84883 1.67597 1.33271 1.23211 1.20637 1.18589 0.86936 0.93048 1.17932 1.10381 0.97698 0.90524 1.23186 0.98849 0.99605 0.85116 1.45803 1.44227 1.16417 1.09613 0.69316 1.76829 1.20235 0.95228 1.22020 1.22686 0.98010 0.97786 0.90681 1.19998 1.00353 0.89614 1.01815 0.89390 0.94662 0.94086 0.89129 0.91103 0.89317 0.77095 0.91174 0.89090 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.90 71.98 0.71 -3.44 16 2 C -0.03 -1.06 6.28 29.85 0.19 -0.87 16 3 C 0.02 1.22 6.45 42.58 0.27 1.49 16 4 N -0.63 -35.97 11.31 -295.62 -3.34 -39.31 16 5 C 0.31 18.56 7.62 84.77 0.65 19.20 16 6 C -0.46 -25.92 9.43 23.03 0.22 -25.71 16 7 H 0.11 5.90 7.85 -2.91 -0.02 5.88 16 8 C 0.03 1.45 5.50 85.36 0.47 1.92 16 9 N -0.80 -42.94 11.95 21.88 0.26 -42.68 16 10 Si 1.01 37.51 29.56 68.60 2.03 39.54 16 11 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 12 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 13 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 14 O -0.20 -11.63 9.04 -17.89 -0.16 -11.79 16 15 C -0.14 -6.90 6.93 24.75 0.17 -6.73 16 16 C -0.15 -6.34 5.87 -20.12 -0.12 -6.46 16 17 C 0.08 2.46 11.04 84.31 0.93 3.39 16 18 N -0.45 -11.84 7.30 -55.90 -0.41 -12.25 16 19 H 0.46 7.48 8.96 -213.43 -1.91 5.56 16 20 N -0.32 -10.98 12.63 -46.60 -0.59 -11.57 16 21 C 0.07 2.94 7.27 43.55 0.32 3.26 16 22 C -0.06 -2.25 10.28 71.24 0.73 -1.52 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 2.61 6.33 -2.38 -0.02 2.60 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.30 14.08 8.29 -92.71 -0.77 13.31 16 29 H 0.21 4.65 7.36 -2.91 -0.02 4.63 16 30 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.05 2.27 8.01 -2.39 -0.02 2.25 16 Total: -1.00 -73.33 285.33 1.57 -71.76 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.76 Total: 21.76 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.54 Total: -15.45 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.08 Total: -105.81 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.16 Total: -11.79 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -73.33 1.57 -71.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.204 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds