Wall clock time and date at job start Mon Mar 30 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35916 * 116.99764 * 2 1 4 4 C 1.38498 * 119.70991 * 180.02562 * 3 2 1 5 5 C 1.38950 * 119.98816 * 180.02562 * 4 3 2 6 6 C 1.40625 * 119.54788 * 359.73962 * 5 4 3 7 7 C 1.46647 * 106.11055 * 180.31368 * 6 5 4 8 8 C 1.34315 * 107.06165 * 0.21113 * 7 6 5 9 9 N 1.37097 * 109.89556 * 359.54180 * 8 7 6 10 10 C 1.37197 * 125.09708 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00182 * 158.91456 * 10 9 8 12 12 C 1.38798 * 119.99875 * 338.91319 * 10 9 8 13 13 N 1.31484 * 119.99760 * 160.52056 * 12 10 9 14 14 Si 1.86796 * 120.00077 * 340.51420 * 12 10 9 15 15 H 1.48507 * 109.46726 * 94.00793 * 14 12 10 16 16 H 1.48499 * 109.47273 * 214.00713 * 14 12 10 17 17 H 1.48500 * 109.47122 * 334.01381 * 14 12 10 18 18 C 1.39960 * 120.01147 * 0.48949 * 6 5 4 19 19 O 1.35827 * 120.18536 * 179.78576 * 18 6 5 20 20 C 1.42900 * 117.00068 * 179.72511 * 19 18 6 21 21 C 1.38300 * 119.62822 * 359.51696 * 18 6 5 22 22 H 1.08996 * 109.47050 * 300.00305 * 1 2 3 23 23 H 1.08999 * 109.47177 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.01089 * 0.02562 * 4 3 2 26 26 H 1.08005 * 126.46742 * 180.24315 * 7 6 5 27 27 H 1.07991 * 125.05103 * 180.02562 * 8 7 6 28 28 H 0.96995 * 119.99499 * 179.97438 * 13 12 10 29 29 H 1.08992 * 109.47079 * 60.00117 * 20 19 18 30 30 H 1.09001 * 109.46851 * 180.02562 * 20 19 18 31 31 H 1.08999 * 109.47037 * 299.99884 * 20 19 18 32 32 H 1.08002 * 119.87480 * 180.23333 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4294 1.2766 -0.0005 5 6 4.0662 2.5116 0.0000 6 6 3.2967 3.6886 -0.0045 7 6 4.2533 4.8001 -0.0103 8 6 5.4836 4.2613 -0.0138 9 7 5.3938 2.8933 -0.0004 10 6 6.4622 2.0326 -0.0003 11 1 6.3379 1.0175 0.3466 12 6 7.7030 2.4666 -0.4461 13 7 8.7902 1.8104 -0.1054 14 14 7.8281 3.9827 -1.5300 15 1 8.0863 5.1759 -0.6843 16 1 8.9427 3.8101 -2.4959 17 1 6.5547 4.1677 -2.2714 18 6 1.8992 3.6114 0.0009 19 8 1.1526 4.7460 0.0010 20 6 -0.2677 4.5880 0.0006 21 6 1.2829 2.3733 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0133 0.3679 -0.0014 26 1 4.0136 5.8533 -0.0111 27 1 6.4063 4.8223 -0.0181 28 1 9.6573 2.1135 -0.4172 29 1 -0.5722 4.0370 0.8903 30 1 -0.7424 5.5692 0.0003 31 1 -0.5717 4.0374 -0.8896 32 1 0.2048 2.3091 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075234576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:00 Heat of formation + Delta-G solvation = -5.625268 kcal Electronic energy + Delta-G solvation = -17687.746592 eV Core-core repulsion = 14808.271037 eV Total energy + Delta-G solvation = -2879.475555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56119 -38.90676 -38.26620 -34.65342 -33.06658 -30.97638 -28.97957 -28.19433 -27.56356 -25.74244 -24.66721 -21.79250 -20.60652 -20.31123 -18.37957 -16.91176 -16.38511 -15.86219 -15.53456 -15.48132 -15.09434 -14.87251 -14.29651 -13.90700 -13.74076 -13.22282 -12.49477 -12.38546 -12.17203 -12.01705 -11.76043 -11.39191 -11.24178 -11.04653 -10.75559 -10.69386 -10.36211 -10.00456 -9.57966 -9.13048 -8.39597 -7.40341 -6.85126 -6.57726 -4.30924 1.97601 2.38597 2.94302 3.10499 3.20169 3.58533 3.66321 3.75016 3.88401 4.45866 4.56524 4.91271 5.23434 5.28802 5.31377 5.36092 5.40425 5.57288 5.62333 5.74343 5.82533 6.08223 6.16624 6.43508 6.50347 6.80536 6.93537 7.02163 7.25923 7.31056 7.71939 7.75470 7.79334 8.13040 8.24058 8.83863 9.12795 10.22774 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.007706 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.023094 B = 3632.728068 C = 4516.469798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.143 3.857 4 C -0.171 4.171 5 C 0.121 3.879 6 C -0.171 4.171 7 C -0.210 4.210 8 C -0.013 4.013 9 N -0.288 5.288 10 C -0.342 4.342 11 H 0.122 0.878 12 C 0.068 3.932 13 N -0.835 5.835 14 Si 0.888 3.112 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.248 1.248 18 C 0.203 3.797 19 O -0.313 6.313 20 C 0.030 3.970 21 C -0.335 4.335 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.151 0.849 28 H 0.285 0.715 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 2.584 -0.720 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C 0.096 3.904 4 C -0.193 4.193 5 C 0.006 3.994 6 C -0.176 4.176 7 C -0.235 4.235 8 C -0.143 4.143 9 N 0.049 4.951 10 C -0.469 4.469 11 H 0.140 0.860 12 C -0.143 4.143 13 N -0.465 5.465 14 Si 0.715 3.285 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.171 1.171 18 C 0.157 3.843 19 O -0.226 6.226 20 C -0.065 4.065 21 C -0.356 4.356 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.139 0.861 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.823 2.341 -0.715 13.054 hybrid contribution -0.144 0.590 -0.495 0.784 sum -12.967 2.932 -1.211 13.349 Atomic orbital electron populations 1.22864 0.79771 1.02756 1.00713 1.86006 1.20190 1.27524 1.89745 1.17871 0.90802 0.82803 0.98876 1.18743 0.90517 0.95832 1.14196 1.17320 0.83656 0.92659 1.05786 1.18063 0.89133 0.94047 1.16401 1.21085 0.90290 0.96754 1.15381 1.21556 0.98679 0.83638 1.10461 1.40337 1.03372 1.04172 1.47215 1.19452 0.85715 0.97003 1.44766 0.85999 1.25286 0.94394 0.98618 0.95996 1.69746 0.98510 1.39781 1.38507 0.86696 0.79430 0.81182 0.81212 1.19484 1.21048 1.17111 1.17990 0.88658 0.84015 0.93640 1.86047 1.17946 1.30105 1.88527 1.22932 0.79792 1.02891 1.00926 1.20585 0.98879 0.91600 1.24502 0.93345 0.93361 0.89103 0.86065 0.84964 0.83209 0.90453 0.93145 0.88930 0.93163 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.80 101.05 0.99 1.41 16 2 O -0.32 -5.68 10.49 -19.48 -0.20 -5.88 16 3 C 0.14 2.86 6.68 -39.19 -0.26 2.59 16 4 C -0.17 -3.90 9.87 -39.22 -0.39 -4.29 16 5 C 0.12 2.97 6.75 -83.86 -0.57 2.41 16 6 C -0.17 -3.95 6.31 -104.96 -0.66 -4.61 16 7 C -0.21 -4.72 11.08 -37.57 -0.42 -5.14 16 8 C -0.01 -0.32 8.33 -16.58 -0.14 -0.46 16 9 N -0.29 -7.43 2.77 -59.74 -0.17 -7.60 16 10 C -0.34 -9.33 10.34 -14.94 -0.15 -9.48 16 11 H 0.12 3.46 8.06 -52.49 -0.42 3.04 16 12 C 0.07 1.81 5.44 -17.49 -0.10 1.71 16 13 N -0.84 -22.62 13.96 55.49 0.77 -21.85 16 14 Si 0.89 20.22 24.66 -169.99 -4.19 16.03 16 15 H -0.27 -5.76 6.66 56.52 0.38 -5.38 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.25 -5.79 6.72 56.52 0.38 -5.41 16 18 C 0.20 4.10 6.72 -38.91 -0.26 3.84 16 19 O -0.31 -5.54 10.50 -19.20 -0.20 -5.74 16 20 C 0.03 0.36 9.81 101.05 0.99 1.35 16 21 C -0.33 -6.16 8.02 -39.26 -0.31 -6.47 16 22 H 0.05 0.54 7.64 -51.93 -0.40 0.14 16 23 H 0.05 0.54 7.64 -51.93 -0.40 0.14 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.12 2.74 8.06 -52.48 -0.42 2.31 16 26 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 27 H 0.15 3.39 4.38 -52.49 -0.23 3.16 16 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.12 1.80 4.48 -52.49 -0.24 1.56 16 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -29.86 270.27 -4.54 -34.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.35 Total: 3.69 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.28 Total: -17.13 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: 0.61 Total: -29.44 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.41 Total: -11.62 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.19 Total: 16.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.86 -4.54 -34.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075234576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.779 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds