Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35916 * 116.99764 * 2 1 4 4 C 1.38498 * 119.70991 * 180.02562 * 3 2 1 5 5 C 1.38950 * 119.98816 * 180.02562 * 4 3 2 6 6 C 1.40625 * 119.54788 * 359.73962 * 5 4 3 7 7 C 1.46647 * 106.11055 * 180.31368 * 6 5 4 8 8 C 1.34315 * 107.06165 * 0.21113 * 7 6 5 9 9 N 1.37097 * 109.89556 * 359.54180 * 8 7 6 10 10 C 1.37197 * 125.09708 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00182 * 158.91456 * 10 9 8 12 12 C 1.38798 * 119.99875 * 338.91319 * 10 9 8 13 13 N 1.31484 * 119.99760 * 160.52056 * 12 10 9 14 14 Si 1.86796 * 120.00077 * 340.51420 * 12 10 9 15 15 H 1.48507 * 109.46726 * 94.00793 * 14 12 10 16 16 H 1.48499 * 109.47273 * 214.00713 * 14 12 10 17 17 H 1.48500 * 109.47122 * 334.01381 * 14 12 10 18 18 C 1.39960 * 120.01147 * 0.48949 * 6 5 4 19 19 O 1.35827 * 120.18536 * 179.78576 * 18 6 5 20 20 C 1.42900 * 117.00068 * 179.72511 * 19 18 6 21 21 C 1.38300 * 119.62822 * 359.51696 * 18 6 5 22 22 H 1.08996 * 109.47050 * 300.00305 * 1 2 3 23 23 H 1.08999 * 109.47177 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08008 * 120.01089 * 0.02562 * 4 3 2 26 26 H 1.08005 * 126.46742 * 180.24315 * 7 6 5 27 27 H 1.07991 * 125.05103 * 180.02562 * 8 7 6 28 28 H 0.96995 * 119.99499 * 179.97438 * 13 12 10 29 29 H 1.08992 * 109.47079 * 60.00117 * 20 19 18 30 30 H 1.09001 * 109.46851 * 180.02562 * 20 19 18 31 31 H 1.08999 * 109.47037 * 299.99884 * 20 19 18 32 32 H 1.08002 * 119.87480 * 180.23333 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4294 1.2766 -0.0005 5 6 4.0662 2.5116 0.0000 6 6 3.2967 3.6886 -0.0045 7 6 4.2533 4.8001 -0.0103 8 6 5.4836 4.2613 -0.0138 9 7 5.3938 2.8933 -0.0004 10 6 6.4622 2.0326 -0.0003 11 1 6.3379 1.0175 0.3466 12 6 7.7030 2.4666 -0.4461 13 7 8.7902 1.8104 -0.1054 14 14 7.8281 3.9827 -1.5300 15 1 8.0863 5.1759 -0.6843 16 1 8.9427 3.8101 -2.4959 17 1 6.5547 4.1677 -2.2714 18 6 1.8992 3.6114 0.0009 19 8 1.1526 4.7460 0.0010 20 6 -0.2677 4.5880 0.0006 21 6 1.2829 2.3733 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0133 0.3679 -0.0014 26 1 4.0136 5.8533 -0.0111 27 1 6.4063 4.8223 -0.0181 28 1 9.6573 2.1135 -0.4172 29 1 -0.5722 4.0370 0.8903 30 1 -0.7424 5.5692 0.0003 31 1 -0.5717 4.0374 -0.8896 32 1 0.2048 2.3091 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075234576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = -25.322783 kcal Electronic energy + Delta-G solvation = -17688.600740 eV Core-core repulsion = 14808.271037 eV Total energy + Delta-G solvation = -2880.329703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25017 -40.42144 -39.61937 -36.28149 -34.93757 -32.74046 -30.57530 -29.67093 -28.70273 -27.00851 -26.51508 -23.41268 -22.24186 -22.03763 -20.00143 -18.53323 -18.00926 -17.48919 -17.07580 -16.81802 -16.47060 -16.26483 -15.77581 -15.48296 -15.47549 -14.88684 -14.28072 -13.98176 -13.72593 -13.34567 -13.14468 -12.75638 -12.69060 -12.53991 -12.35599 -12.16208 -11.92473 -11.79350 -11.24899 -10.79152 -10.13003 -9.10410 -8.83079 -8.27133 -6.33643 0.32981 0.73073 1.14053 1.28466 1.40097 1.85233 2.03374 2.16628 2.46938 2.69245 2.88443 3.06688 3.86557 4.14149 4.17759 4.30126 4.40287 4.45641 4.47863 4.51521 4.55348 4.72839 4.75385 4.79190 4.80342 5.13751 5.24591 5.36963 5.41556 5.62676 5.80440 6.06938 6.25506 6.36484 6.71267 6.91269 7.23116 8.30094 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.007706 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.023094 B = 3632.728068 C = 4516.469798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.167 3.833 4 C -0.221 4.221 5 C 0.104 3.896 6 C -0.198 4.198 7 C -0.200 4.200 8 C -0.033 4.033 9 N -0.315 5.315 10 C -0.365 4.365 11 H 0.085 0.915 12 C 0.029 3.971 13 N -0.877 5.877 14 Si 0.949 3.051 15 H -0.243 1.243 16 H -0.274 1.274 17 H -0.259 1.259 18 C 0.212 3.788 19 O -0.324 6.324 20 C 0.015 3.985 21 C -0.325 4.325 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.293 0.707 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 4.439 -1.220 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.120 3.880 4 C -0.243 4.243 5 C -0.011 4.011 6 C -0.203 4.203 7 C -0.224 4.224 8 C -0.161 4.161 9 N 0.019 4.981 10 C -0.492 4.492 11 H 0.103 0.897 12 C -0.178 4.178 13 N -0.509 5.509 14 Si 0.772 3.228 15 H -0.168 1.168 16 H -0.200 1.200 17 H -0.183 1.183 18 C 0.165 3.835 19 O -0.237 6.237 20 C -0.079 4.079 21 C -0.345 4.345 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.138 0.862 25 H 0.119 0.881 26 H 0.181 0.819 27 H 0.177 0.823 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.311 4.196 -1.201 16.885 hybrid contribution 0.501 -0.072 -0.285 0.581 sum -15.810 4.125 -1.486 16.407 Atomic orbital electron populations 1.23348 0.76361 1.05479 1.02293 1.86016 1.23652 1.26433 1.89005 1.17953 0.89993 0.84419 0.95615 1.18814 0.92208 0.94876 1.18364 1.17791 0.83715 0.94052 1.05499 1.18419 0.90875 0.93496 1.17544 1.21497 0.89523 0.98062 1.13360 1.21873 0.99865 0.83089 1.11301 1.40339 1.03343 1.04668 1.49741 1.19206 0.87256 0.96376 1.46350 0.89714 1.25981 0.93564 1.01661 0.96606 1.69804 0.99168 1.41886 1.39997 0.85778 0.78879 0.78570 0.79580 1.16796 1.19977 1.18310 1.18012 0.88031 0.85496 0.91963 1.86038 1.20880 1.28935 1.87806 1.23410 0.76479 1.05612 1.02362 1.20938 1.00884 0.90055 1.22637 0.91633 0.91646 0.86162 0.88069 0.81861 0.82328 0.89703 0.91596 0.85806 0.91623 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.80 113.37 1.11 1.50 16 2 O -0.34 -11.30 10.49 -92.60 -0.97 -12.27 16 3 C 0.17 6.52 6.68 22.52 0.15 6.67 16 4 C -0.22 -10.49 9.87 22.50 0.22 -10.27 16 5 C 0.10 5.28 6.75 38.90 0.26 5.54 16 6 C -0.20 -9.02 6.31 -20.08 -0.13 -9.15 16 7 C -0.20 -8.75 11.08 23.57 0.26 -8.49 16 8 C -0.03 -1.59 8.33 82.97 0.69 -0.90 16 9 N -0.32 -17.02 2.77 -342.92 -0.95 -17.97 16 10 C -0.37 -21.31 10.34 83.99 0.87 -20.45 16 11 H 0.08 5.35 8.06 -2.91 -0.02 5.33 16 12 C 0.03 1.62 5.44 84.88 0.46 2.08 16 13 N -0.88 -49.70 13.96 21.64 0.30 -49.40 16 14 Si 0.95 42.44 24.66 68.60 1.69 44.13 16 15 H -0.24 -9.78 6.66 99.48 0.66 -9.12 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.26 -11.95 6.72 99.48 0.67 -11.29 16 18 C 0.21 8.01 6.72 22.70 0.15 8.16 16 19 O -0.32 -10.14 10.50 -91.61 -0.96 -11.10 16 20 C 0.02 0.29 9.81 113.37 1.11 1.40 16 21 C -0.32 -10.87 8.02 22.48 0.18 -10.69 16 22 H 0.07 1.13 7.64 -2.39 -0.02 1.11 16 23 H 0.06 1.13 7.64 -2.39 -0.02 1.11 16 24 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 26 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 27 H 0.16 7.09 4.38 -2.91 -0.01 7.08 16 28 H 0.29 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.07 1.05 7.66 -2.39 -0.02 1.04 16 30 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 32 H 0.17 3.96 4.48 -2.91 -0.01 3.95 16 Total: -1.00 -68.98 270.27 5.52 -63.47 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.06 Total: 17.73 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 5.35 Total: -34.59 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.65 Total: -67.37 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -1.93 Total: -23.37 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.69 Total: 44.13 kcal Total: -68.98 5.52 -63.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075234576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.144 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds