Wall clock time and date at job start Mon Mar 30 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 O 1.42895 * 109.87337 * 300.90815 * 3 2 1 5 5 C 1.50991 * 109.82449 * 180.02562 * 3 2 1 6 6 C 1.37660 * 120.59716 * 86.56279 * 5 3 2 7 7 C 1.38473 * 119.98132 * 180.02562 * 6 5 3 8 8 C 1.38424 * 120.25270 * 359.97438 * 7 6 5 9 9 C 1.37898 * 120.30437 * 359.97438 * 8 7 6 10 10 C 1.39780 * 119.80841 * 0.27831 * 9 8 7 11 11 N 1.36579 * 120.21217 * 180.43056 * 10 9 8 12 12 N 1.28795 * 121.51692 * 164.33216 * 11 10 9 13 13 N 1.40433 * 120.26977 * 359.97438 * 12 11 10 14 14 C 1.36498 * 120.85978 * 210.31705 * 13 12 11 15 15 H 1.08002 * 119.99787 * 173.24749 * 14 13 12 16 16 C 1.39035 * 120.00280 * 353.25658 * 14 13 12 17 17 N 1.31359 * 119.99831 * 6.13661 * 16 14 13 18 18 Si 1.86797 * 120.00095 * 186.13675 * 16 14 13 19 19 H 1.48503 * 109.47154 * 94.98673 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.98163 * 18 16 14 21 21 H 1.48499 * 109.47299 * 334.98448 * 18 16 14 22 22 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47162 * 299.99815 * 1 2 3 24 24 H 1.08998 * 109.47308 * 59.99671 * 1 2 3 25 25 H 1.09001 * 109.46853 * 240.00898 * 2 1 3 26 26 H 1.08998 * 109.47308 * 120.00329 * 2 1 3 27 27 H 0.96701 * 113.99626 * 59.09319 * 4 3 2 28 28 H 1.07998 * 120.00987 * 0.09969 * 6 5 3 29 29 H 1.07997 * 119.87816 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.84823 * 179.97438 * 8 7 6 31 31 H 1.07997 * 120.09246 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00578 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.5511 2.1306 -1.1530 5 6 3.5499 1.4519 -0.0006 6 6 4.2505 1.3854 -1.1837 7 6 5.6351 1.3943 -1.1694 8 6 6.3197 1.4705 0.0313 9 6 5.6290 1.5387 1.2229 10 6 4.2313 1.5248 1.2177 11 7 3.5389 1.6008 2.3925 12 7 2.2835 1.8877 2.4167 13 7 1.5900 2.1324 1.2203 14 6 0.5265 2.9875 1.1899 15 1 0.0718 3.2503 0.2461 16 6 0.0287 3.5203 2.3736 17 7 0.6534 3.2984 3.5076 18 14 -1.5286 4.5517 2.3515 19 1 -2.6975 3.6901 2.6622 20 1 -1.4235 5.6288 3.3684 21 1 -1.7029 5.1562 1.0063 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5864 2.1608 -1.2133 28 1 3.7204 1.3274 -2.1229 29 1 6.1831 1.3425 -2.0986 30 1 7.3996 1.4766 0.0349 31 1 6.1666 1.5984 2.1577 32 1 0.3060 3.6698 4.3336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075626455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:29 Heat of formation + Delta-G solvation = 59.089356 kcal Electronic energy + Delta-G solvation = -18469.545672 eV Core-core repulsion = 15625.169105 eV Total energy + Delta-G solvation = -2844.376567 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67651 -37.18664 -35.66975 -33.82462 -32.35584 -31.00149 -30.32412 -29.23318 -26.34742 -24.13287 -23.28231 -21.72854 -21.00222 -19.03705 -17.94967 -17.54770 -15.88286 -15.56208 -15.07112 -14.33876 -14.13907 -13.89633 -13.67752 -12.99646 -12.81824 -12.49970 -12.00335 -11.74042 -11.60126 -11.56868 -11.22903 -11.13119 -11.00268 -10.78561 -10.64373 -10.57948 -10.17951 -9.76723 -9.41754 -8.64425 -8.35873 -8.09666 -7.09830 -6.73611 -4.07700 1.64885 2.16219 2.93562 2.94395 3.00759 3.46455 3.57030 4.12924 4.49265 4.65821 4.78334 5.20157 5.44246 5.56914 5.68124 5.75027 5.81705 5.91836 6.08437 6.24032 6.27164 6.33779 6.45328 6.55706 6.69725 6.75279 6.90791 7.01636 7.21718 7.32628 7.40355 7.76764 7.86203 7.97103 8.41520 8.94195 10.14905 10.45250 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.008982 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.139433 B = 3116.483465 C = 3550.156486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.373 3.627 4 O -0.554 6.554 5 C -0.200 4.200 6 C -0.048 4.048 7 C -0.203 4.203 8 C -0.091 4.091 9 C -0.147 4.147 10 C 0.130 3.870 11 N -0.424 5.424 12 N 0.076 4.924 13 N -0.318 5.318 14 C -0.239 4.239 15 H 0.117 0.883 16 C 0.020 3.980 17 N -0.746 5.746 18 Si 0.936 3.064 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.263 1.263 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.376 0.624 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -2.437 -6.340 6.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.183 4.183 3 C 0.246 3.754 4 O -0.357 6.357 5 C -0.211 4.211 6 C -0.067 4.067 7 C -0.225 4.225 8 C -0.111 4.111 9 C -0.171 4.171 10 C 0.010 3.990 11 N -0.296 5.296 12 N 0.098 4.902 13 N -0.127 5.127 14 C -0.383 4.383 15 H 0.134 0.866 16 C -0.197 4.197 17 N -0.378 5.378 18 Si 0.759 3.241 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.187 1.187 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.227 0.773 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.974 -2.438 -4.974 5.624 hybrid contribution -0.972 0.532 -1.171 1.612 sum -1.946 -1.907 -6.144 6.721 Atomic orbital electron populations 1.21800 0.95004 1.01505 1.02847 1.22375 0.96973 0.96175 1.02810 1.20247 0.89878 0.88472 0.76759 1.86580 1.26829 1.78706 1.43559 1.19930 0.92131 1.14356 0.94647 1.20453 0.93691 0.96066 0.96529 1.20663 0.93835 1.10837 0.97139 1.20784 0.98530 0.99206 0.92555 1.20560 0.91959 1.06985 0.97605 1.19108 0.94281 0.96213 0.89407 1.74205 1.00805 1.33921 1.20715 1.81666 0.98624 1.09714 1.00219 1.50212 1.22603 1.34273 1.05587 1.20045 1.04560 1.17925 0.95722 0.86601 1.25670 1.00212 0.99131 0.94683 1.70162 1.33884 1.34910 0.98831 0.85751 0.79946 0.79086 0.79274 1.19434 1.19933 1.18746 0.92935 0.90589 0.93040 0.90780 0.91198 0.77348 0.86984 0.87524 0.87269 0.86530 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.25 37.16 0.34 -2.17 16 2 C -0.14 -2.73 5.41 -26.73 -0.14 -2.88 16 3 C 0.37 8.14 1.11 -68.54 -0.08 8.07 16 4 O -0.55 -10.96 11.63 -35.23 -0.41 -11.36 16 5 C -0.20 -4.65 4.97 -104.11 -0.52 -5.17 16 6 C -0.05 -0.98 9.38 -39.71 -0.37 -1.36 16 7 C -0.20 -3.76 10.05 -39.43 -0.40 -4.16 16 8 C -0.09 -1.70 10.02 -39.64 -0.40 -2.09 16 9 C -0.15 -3.19 10.00 -39.13 -0.39 -3.58 16 10 C 0.13 3.24 6.60 -84.60 -0.56 2.68 16 11 N -0.42 -11.52 11.66 32.17 0.38 -11.15 16 12 N 0.08 2.09 10.24 60.35 0.62 2.70 16 13 N -0.32 -7.85 2.96 -52.16 -0.15 -8.01 16 14 C -0.24 -5.58 8.43 -15.18 -0.13 -5.70 16 15 H 0.12 2.38 6.21 -52.49 -0.33 2.05 16 16 C 0.02 0.47 5.49 -17.46 -0.10 0.38 16 17 N -0.75 -19.01 11.39 55.50 0.63 -18.38 16 18 Si 0.94 17.22 29.56 -169.99 -5.02 12.20 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.42 6.94 -51.93 -0.36 1.05 16 24 H 0.05 0.72 6.77 -51.93 -0.35 0.37 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.38 6.14 5.84 45.56 0.27 6.41 16 28 H 0.11 2.09 7.66 -52.49 -0.40 1.69 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 32 H 0.28 6.56 8.31 -40.82 -0.34 6.23 16 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -29.47 269.79 -5.48 -34.95 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -2.85 Total: 10.98 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.73 Total: -15.99 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 1.47 Total: -34.83 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.41 Total: -11.36 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.02 Total: 12.20 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.47 -5.48 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075626455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.037 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds