Wall clock time and date at job start Mon Mar 30 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 O 1.42895 * 109.87337 * 300.90815 * 3 2 1 5 5 C 1.50991 * 109.82449 * 180.02562 * 3 2 1 6 6 C 1.37660 * 120.59716 * 86.56279 * 5 3 2 7 7 C 1.38473 * 119.98132 * 180.02562 * 6 5 3 8 8 C 1.38424 * 120.25270 * 359.97438 * 7 6 5 9 9 C 1.37898 * 120.30437 * 359.97438 * 8 7 6 10 10 C 1.39780 * 119.80841 * 0.27831 * 9 8 7 11 11 N 1.36579 * 120.21217 * 180.43056 * 10 9 8 12 12 N 1.28795 * 121.51692 * 164.33216 * 11 10 9 13 13 N 1.40433 * 120.26977 * 359.97438 * 12 11 10 14 14 C 1.36498 * 120.85978 * 210.31705 * 13 12 11 15 15 H 1.08002 * 119.99787 * 173.24749 * 14 13 12 16 16 C 1.39035 * 120.00280 * 353.25658 * 14 13 12 17 17 N 1.31359 * 119.99831 * 6.13661 * 16 14 13 18 18 Si 1.86797 * 120.00095 * 186.13675 * 16 14 13 19 19 H 1.48503 * 109.47154 * 94.98673 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.98163 * 18 16 14 21 21 H 1.48499 * 109.47299 * 334.98448 * 18 16 14 22 22 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47162 * 299.99815 * 1 2 3 24 24 H 1.08998 * 109.47308 * 59.99671 * 1 2 3 25 25 H 1.09001 * 109.46853 * 240.00898 * 2 1 3 26 26 H 1.08998 * 109.47308 * 120.00329 * 2 1 3 27 27 H 0.96701 * 113.99626 * 59.09319 * 4 3 2 28 28 H 1.07998 * 120.00987 * 0.09969 * 6 5 3 29 29 H 1.07997 * 119.87816 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.84823 * 179.97438 * 8 7 6 31 31 H 1.07997 * 120.09246 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00578 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.5511 2.1306 -1.1530 5 6 3.5499 1.4519 -0.0006 6 6 4.2505 1.3854 -1.1837 7 6 5.6351 1.3943 -1.1694 8 6 6.3197 1.4705 0.0313 9 6 5.6290 1.5387 1.2229 10 6 4.2313 1.5248 1.2177 11 7 3.5389 1.6008 2.3925 12 7 2.2835 1.8877 2.4167 13 7 1.5900 2.1324 1.2203 14 6 0.5265 2.9875 1.1899 15 1 0.0718 3.2503 0.2461 16 6 0.0287 3.5203 2.3736 17 7 0.6534 3.2984 3.5076 18 14 -1.5286 4.5517 2.3515 19 1 -2.6975 3.6901 2.6622 20 1 -1.4235 5.6288 3.3684 21 1 -1.7029 5.1562 1.0063 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5864 2.1608 -1.2133 28 1 3.7204 1.3274 -2.1229 29 1 6.1831 1.3425 -2.0986 30 1 7.3996 1.4766 0.0349 31 1 6.1666 1.5984 2.1577 32 1 0.3060 3.6698 4.3336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075626455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:28 Heat of formation + Delta-G solvation = 38.064163 kcal Electronic energy + Delta-G solvation = -18470.457393 eV Core-core repulsion = 15625.169105 eV Total energy + Delta-G solvation = -2845.288288 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33231 -38.79065 -37.37532 -35.58530 -33.90621 -32.72084 -31.90391 -30.88320 -28.03723 -25.78269 -25.01550 -23.25736 -22.66281 -20.73215 -19.63619 -19.19939 -17.57118 -17.14892 -16.72432 -15.88815 -15.72694 -15.43702 -15.25616 -14.57555 -14.47721 -14.10057 -13.55129 -13.32273 -13.20734 -13.05050 -12.78430 -12.67887 -12.52840 -12.36416 -12.08433 -12.04685 -11.78392 -11.40204 -11.14460 -10.40757 -10.11282 -9.69872 -8.84998 -8.49897 -5.91063 -0.05444 0.56130 1.43059 1.49323 1.61018 1.76206 1.98443 2.45446 2.84053 2.99596 3.16127 3.64772 3.90950 4.09485 4.20715 4.23959 4.34069 4.38922 4.60125 4.71948 4.77101 4.89854 4.90863 5.05838 5.10106 5.21783 5.33225 5.41701 5.62047 5.75364 5.77978 6.02540 6.29522 6.48094 6.66649 7.17381 8.40309 8.64182 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.008982 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.139433 B = 3116.483465 C = 3550.156486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.367 3.633 4 O -0.552 6.552 5 C -0.228 4.228 6 C -0.057 4.057 7 C -0.190 4.190 8 C -0.080 4.080 9 C -0.170 4.170 10 C 0.091 3.909 11 N -0.468 5.468 12 N 0.027 4.973 13 N -0.320 5.320 14 C -0.250 4.250 15 H 0.145 0.855 16 C -0.025 4.025 17 N -0.790 5.790 18 Si 1.015 2.985 19 H -0.260 1.260 20 H -0.282 1.282 21 H -0.243 1.243 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.391 0.609 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -2.014 -9.255 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.241 3.759 4 O -0.358 6.358 5 C -0.238 4.238 6 C -0.076 4.076 7 C -0.211 4.211 8 C -0.100 4.100 9 C -0.194 4.194 10 C -0.028 4.028 11 N -0.341 5.341 12 N 0.049 4.951 13 N -0.129 5.129 14 C -0.395 4.395 15 H 0.162 0.838 16 C -0.239 4.239 17 N -0.423 5.423 18 Si 0.834 3.166 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.166 1.166 22 H 0.093 0.907 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.243 0.757 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.134 0.866 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.615 -2.054 -7.918 8.338 hybrid contribution -0.716 0.413 -0.376 0.908 sum -2.331 -1.641 -8.294 8.770 Atomic orbital electron populations 1.21749 0.92770 1.03044 1.02792 1.22285 0.98871 0.94305 1.02056 1.20420 0.89747 0.89377 0.76356 1.86542 1.28281 1.78575 1.42359 1.20254 0.93186 1.15245 0.95095 1.20766 0.94818 0.95817 0.96165 1.21194 0.93328 1.07892 0.98726 1.21234 1.00580 0.96796 0.91342 1.20805 0.91180 1.08195 0.99206 1.19550 0.95649 0.97902 0.89709 1.74110 1.01133 1.36342 1.22494 1.81553 0.99290 1.12406 1.01804 1.50455 1.22409 1.33917 1.06153 1.20826 1.04237 1.17219 0.97188 0.83802 1.26863 1.03258 0.99878 0.93856 1.70344 1.35879 1.36177 0.99872 0.84599 0.75289 0.76900 0.79831 1.18486 1.20717 1.16641 0.90694 0.93372 0.90156 0.88759 0.94517 0.75661 0.85134 0.83300 0.83104 0.86602 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.25 71.98 0.67 -3.89 16 2 C -0.14 -5.12 5.41 30.60 0.17 -4.96 16 3 C 0.37 15.97 1.11 44.20 0.05 16.02 16 4 O -0.55 -20.78 11.63 -148.98 -1.73 -22.52 16 5 C -0.23 -10.61 4.97 -19.53 -0.10 -10.71 16 6 C -0.06 -2.20 9.38 22.19 0.21 -1.99 16 7 C -0.19 -6.39 10.05 22.37 0.22 -6.17 16 8 C -0.08 -2.80 10.02 22.23 0.22 -2.58 16 9 C -0.17 -7.47 10.00 22.56 0.23 -7.24 16 10 C 0.09 4.69 6.60 39.15 0.26 4.94 16 11 N -0.47 -27.06 11.66 -52.15 -0.61 -27.67 16 12 N 0.03 1.55 10.24 37.02 0.38 1.93 16 13 N -0.32 -16.16 2.96 -418.93 -1.24 -17.40 16 14 C -0.25 -11.62 8.43 84.16 0.71 -10.91 16 15 H 0.14 5.62 6.21 -2.91 -0.02 5.60 16 16 C -0.02 -1.16 5.49 84.95 0.47 -0.69 16 17 N -0.79 -41.71 11.39 21.68 0.25 -41.47 16 18 Si 1.01 34.44 29.56 68.60 2.03 36.47 16 19 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 20 H -0.28 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.24 -7.43 7.11 99.48 0.71 -6.72 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.77 6.94 -2.39 -0.02 1.75 16 24 H 0.08 2.00 6.77 -2.39 -0.02 1.98 16 25 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.39 11.66 5.84 -74.06 -0.43 11.22 16 28 H 0.13 4.48 7.66 -2.91 -0.02 4.46 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -68.10 269.79 2.89 -65.22 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.72 Total: 33.61 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.10 Total: -28.17 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.22 Total: -84.61 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.73 Total: -22.52 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -68.10 2.89 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075626455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.280 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds