Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34235 * 126.49881 * 2 1 4 4 C 1.50706 * 125.03154 * 0.02562 * 3 2 1 5 5 N 1.36808 * 109.93597 * 180.02562 * 3 2 1 6 6 C 1.46503 * 125.07147 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.47126 * 89.99451 * 6 5 3 8 8 H 1.08003 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00346 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46898 * 60.00024 * 11 9 7 13 13 H 1.48494 * 109.47354 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47132 * 300.00547 * 11 9 7 15 15 C 1.37821 * 109.86192 * 359.97438 * 5 3 2 16 16 C 1.39096 * 133.39858 * 180.02562 * 15 5 3 17 17 C 1.37705 * 119.95249 * 180.02562 * 16 15 5 18 18 C 1.39035 * 120.65369 * 359.97438 * 17 16 15 19 19 F 1.35096 * 119.83909 * 180.02562 * 18 17 16 20 20 C 1.37792 * 120.32874 * 0.27857 * 18 17 16 21 21 C 1.39674 * 119.62691 * 359.48068 * 20 18 17 22 22 H 1.08998 * 109.47025 * 270.00043 * 1 2 3 23 23 H 1.08998 * 109.47071 * 29.99711 * 1 2 3 24 24 H 1.08999 * 109.47016 * 150.00155 * 1 2 3 25 25 H 1.08994 * 109.47364 * 90.02293 * 4 3 2 26 26 H 1.09000 * 109.47089 * 210.02900 * 4 3 2 27 27 H 1.09002 * 109.46801 * 330.02212 * 4 3 2 28 28 H 1.08995 * 109.47000 * 209.99690 * 6 5 3 29 29 H 1.08996 * 109.46930 * 330.00171 * 6 5 3 30 30 H 0.96993 * 120.00283 * 180.02562 * 10 9 7 31 31 H 1.08003 * 120.02233 * 359.97438 * 16 15 5 32 32 H 1.08008 * 119.67698 * 179.97438 * 17 16 15 33 33 H 1.07996 * 120.19228 * 179.68884 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 6 1.8280 2.5085 0.0006 5 7 3.6168 0.6891 -0.0006 6 6 4.7655 1.5984 -0.0002 7 6 5.1596 1.9093 1.4208 8 1 4.6097 1.4729 2.2415 9 6 6.2221 2.7509 1.6731 10 7 6.8914 3.2828 0.6737 11 14 6.7102 3.1369 3.4343 12 1 7.0751 1.8788 4.1339 13 1 7.8746 4.0585 3.4347 14 1 5.5693 3.7795 4.1347 15 6 3.6961 -0.6868 -0.0004 16 6 4.7601 -1.5828 -0.0003 17 6 4.5175 -2.9383 -0.0006 18 6 3.2152 -3.4254 -0.0005 19 9 2.9962 -4.7584 -0.0003 20 6 2.1469 -2.5551 -0.0059 21 6 2.3783 -1.1777 -0.0004 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.7137 2.8530 1.0283 26 1 2.5566 3.1351 -0.5138 27 1 0.8684 2.5712 -0.5126 28 1 5.6026 1.1264 -0.5145 29 1 4.4978 2.5220 -0.5133 30 1 7.6391 3.8746 0.8512 31 1 5.7758 -1.2155 -0.0008 32 1 5.3470 -3.6300 -0.0010 33 1 1.1363 -2.9359 -0.0108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075626533.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = -19.817856 kcal Electronic energy + Delta-G solvation = -17439.607214 eV Core-core repulsion = 14571.889012 eV Total energy + Delta-G solvation = -2867.718202 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.71646 -42.24948 -37.88065 -35.68226 -34.16983 -31.98202 -31.11349 -30.01198 -28.09282 -26.72163 -24.48449 -22.98658 -22.20572 -19.94425 -18.82830 -18.30386 -17.73315 -16.92872 -16.52919 -16.42489 -15.87615 -15.61013 -15.10995 -14.48169 -14.36989 -14.04520 -13.83872 -13.63330 -13.60054 -13.45242 -13.19829 -13.01501 -12.75084 -12.65073 -12.45700 -12.24094 -12.14356 -11.59771 -11.36764 -10.75657 -10.44624 -8.91891 -8.50805 -8.19286 -6.52604 0.07558 0.52295 1.35805 1.36851 1.45501 1.78415 2.15627 2.34604 2.80152 2.95122 3.34453 3.70855 3.90392 4.01746 4.23389 4.33565 4.47093 4.49146 4.70201 4.78979 4.82398 4.89061 4.92336 4.98253 5.07182 5.13695 5.19906 5.25328 5.30573 5.51362 5.52790 5.81663 5.89980 6.06493 6.40049 6.47702 6.68032 7.19894 8.70866 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.007343 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.588595 B = 3812.296857 C = 4669.474300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.204 4.204 3 C 0.078 3.922 4 C -0.085 4.085 5 N -0.467 5.467 6 C 0.253 3.747 7 C -0.553 4.553 8 H 0.050 0.950 9 C 0.024 3.976 10 N -0.919 5.919 11 Si 0.965 3.035 12 H -0.273 1.273 13 H -0.275 1.275 14 H -0.267 1.267 15 C 0.065 3.935 16 C -0.104 4.104 17 C -0.137 4.137 18 C 0.051 3.949 19 F -0.146 7.146 20 C -0.107 4.107 21 C -0.102 4.102 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.021 0.979 29 H 0.036 0.964 30 H 0.272 0.728 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -6.161 -1.424 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.210 4.210 3 C -0.031 4.031 4 C -0.142 4.142 5 N -0.146 5.146 6 C 0.133 3.867 7 C -0.591 4.591 8 H 0.069 0.931 9 C -0.177 4.177 10 N -0.557 5.557 11 Si 0.789 3.211 12 H -0.199 1.199 13 H -0.200 1.200 14 H -0.192 1.192 15 C -0.043 4.043 16 C -0.124 4.124 17 C -0.157 4.157 18 C 0.031 3.969 19 F -0.125 7.125 20 C -0.126 4.126 21 C -0.107 4.107 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.404 -5.810 -1.488 11.154 hybrid contribution 1.039 0.165 0.749 1.292 sum -8.365 -5.645 -0.739 10.118 Atomic orbital electron populations 1.20088 0.86769 1.03054 1.02083 1.20308 0.96609 0.88760 1.15361 1.20796 0.82362 0.97735 1.02232 1.20485 1.02161 0.88127 1.03378 1.44636 1.06921 1.04280 1.58742 1.19200 0.82077 0.88089 0.97321 1.21451 1.15921 1.29689 0.92029 0.93138 1.25704 0.95365 0.94789 1.01859 1.69994 1.21025 1.31651 1.33024 0.85500 0.78169 0.78321 0.79135 1.19850 1.19956 1.19191 1.18700 0.96209 0.84035 1.05374 1.20025 0.97363 0.91768 1.03292 1.20823 0.96145 0.94608 1.04125 1.17265 0.93980 0.76988 1.08715 1.91432 1.95653 1.30707 1.94712 1.20435 0.99178 0.90394 1.02566 1.19076 0.92018 0.93224 1.06409 0.91554 0.90366 0.91163 0.90482 0.92469 0.87169 0.96052 0.94561 0.91842 0.86095 0.82695 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.17 71.24 0.72 -0.78 16 2 C -0.20 -7.01 6.31 -18.62 -0.12 -7.12 16 3 C 0.08 3.00 6.83 40.87 0.28 3.28 16 4 C -0.08 -2.64 9.82 71.24 0.70 -1.94 16 5 N -0.47 -20.99 2.76 -505.48 -1.40 -22.39 16 6 C 0.25 12.82 5.53 85.63 0.47 13.29 16 7 C -0.55 -30.02 9.39 25.60 0.24 -29.78 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.02 1.28 5.46 84.65 0.46 1.74 16 10 N -0.92 -51.25 13.29 21.45 0.28 -50.96 16 11 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.07 2.78 6.81 38.99 0.27 3.05 16 16 C -0.10 -4.08 9.95 22.35 0.22 -3.85 16 17 C -0.14 -4.55 9.99 22.33 0.22 -4.32 16 18 C 0.05 1.66 7.29 22.36 0.16 1.82 16 19 F -0.15 -4.46 17.26 44.97 0.78 -3.69 16 20 C -0.11 -3.46 10.07 22.51 0.23 -3.24 16 21 C -0.10 -3.83 6.35 -20.20 -0.13 -3.96 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.55 7.05 -2.39 -0.02 1.53 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 1.94 6.92 -2.39 -0.02 1.92 16 27 H 0.11 2.54 7.04 -2.39 -0.02 2.52 16 28 H 0.02 1.16 8.10 -2.39 -0.02 1.14 16 29 H 0.04 1.89 6.88 -2.39 -0.02 1.87 16 30 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -60.26 288.84 6.54 -53.72 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.11 Total: 10.83 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.73 Total: -31.82 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.11 Total: -73.35 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -60.26 6.54 -53.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075626533.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.907 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds