Wall clock time and date at job start Mon Mar 30 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34242 * 125.03301 * 2 1 4 4 C 1.50698 * 126.49849 * 359.93029 * 3 2 1 5 5 C 1.50706 * 109.47294 * 89.99628 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 C 1.46493 * 107.00825 * 180.19044 * 3 2 1 14 14 C 1.39673 * 133.97046 * 179.74651 * 13 3 2 15 15 C 1.37796 * 119.62606 * 180.02562 * 14 13 3 16 16 F 1.35102 * 119.82924 * 180.02562 * 15 14 13 17 17 C 1.39030 * 120.33226 * 0.02562 * 15 14 13 18 18 C 1.37718 * 120.65170 * 359.63494 * 17 15 14 19 19 C 1.39099 * 119.95036 * 0.57180 * 18 17 15 20 20 N 1.36809 * 125.03848 * 179.97438 * 2 1 3 21 21 C 1.46507 * 125.06362 * 0.06793 * 20 2 1 22 22 H 1.08995 * 109.47342 * 90.00043 * 1 2 3 23 23 H 1.09006 * 109.47293 * 210.00225 * 1 2 3 24 24 H 1.09006 * 109.47240 * 329.99573 * 1 2 3 25 25 H 1.09001 * 109.46665 * 330.00009 * 4 3 2 26 26 H 1.09000 * 109.47722 * 210.00341 * 4 3 2 27 27 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.18873 * 0.02562 * 14 13 3 29 29 H 1.08005 * 119.67461 * 180.02562 * 17 15 14 30 30 H 1.08002 * 120.02361 * 179.91647 * 18 17 15 31 31 H 1.09007 * 109.46480 * 90.00031 * 21 20 2 32 32 H 1.08996 * 109.47246 * 209.99688 * 21 20 2 33 33 H 1.09004 * 109.47156 * 330.00443 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2775 1.0992 0.0000 4 6 1.8002 2.5286 -0.0015 5 6 1.6395 3.0061 1.4189 6 1 1.8614 2.3410 2.2404 7 6 1.2093 4.2917 1.6695 8 7 0.9387 5.1014 0.6690 9 14 1.0109 4.8838 3.4300 10 1 2.2861 5.4848 3.8969 11 1 -0.0680 5.9023 3.4911 12 1 0.6569 3.7349 4.3017 13 6 3.6706 0.6459 -0.0047 14 6 4.9037 1.3017 -0.0112 15 6 6.0676 0.5640 -0.0148 16 9 7.2626 1.1942 -0.0206 17 6 6.0182 -0.8254 -0.0125 18 6 4.8093 -1.4849 0.0010 19 6 3.6224 -0.7596 0.0004 20 7 2.2924 -1.1201 0.0005 21 6 1.7938 -2.4978 -0.0003 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 0.8414 2.5908 -0.5163 26 1 2.5296 3.1548 -0.5150 27 1 0.6364 6.0060 0.8454 28 1 4.9449 2.3810 -0.0134 29 1 6.9370 -1.3931 -0.0149 30 1 4.7827 -2.5646 0.0013 31 1 1.6711 -2.8391 -1.0283 32 1 2.5064 -3.1424 0.5140 33 1 0.8327 -2.5366 0.5125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:39 Heat of formation + Delta-G solvation = -15.500742 kcal Electronic energy + Delta-G solvation = -17412.654881 eV Core-core repulsion = 14545.123883 eV Total energy + Delta-G solvation = -2867.530998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.73642 -42.25892 -37.84556 -35.75048 -34.00694 -31.95340 -31.09325 -30.21657 -27.74669 -26.62692 -24.47971 -23.05370 -22.19957 -19.93870 -18.46736 -18.29037 -17.74541 -16.87970 -16.59787 -16.41302 -16.14912 -15.82809 -15.08413 -14.43567 -14.38365 -14.08179 -13.86397 -13.70991 -13.58122 -13.44851 -13.07547 -13.02571 -12.77665 -12.57371 -12.44864 -11.87773 -11.74540 -11.45901 -11.42859 -10.56815 -10.40903 -8.91253 -8.42671 -8.05030 -6.27533 0.07967 0.47913 1.37797 1.39724 1.50212 1.81625 1.96363 2.42715 2.80939 3.13952 3.38714 3.71059 3.91717 3.99503 4.08702 4.34232 4.43484 4.49367 4.54878 4.69300 4.75100 4.82502 4.96341 5.02791 5.13766 5.19851 5.26118 5.29584 5.39026 5.69492 5.79360 5.87217 6.00708 6.26965 6.34004 6.56239 6.84376 7.40241 8.93296 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.007990 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.738961 B = 3503.604586 C = 4588.439578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.069 3.931 3 C -0.172 4.172 4 C 0.099 3.901 5 C -0.517 4.517 6 H 0.046 0.954 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.265 1.265 13 C -0.110 4.110 14 C -0.125 4.125 15 C 0.048 3.952 16 F -0.153 7.153 17 C -0.131 4.131 18 C -0.088 4.088 19 C 0.079 3.921 20 N -0.482 5.482 21 C 0.072 3.928 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.009 0.991 26 H -0.014 1.014 27 H 0.264 0.736 28 H 0.106 0.894 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -18.122 -1.327 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.037 4.037 3 C -0.178 4.178 4 C 0.061 3.939 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.115 4.115 14 C -0.145 4.145 15 C 0.028 3.972 16 F -0.132 7.132 17 C -0.150 4.150 18 C -0.108 4.108 19 C -0.029 4.029 20 N -0.166 5.166 21 C -0.068 4.068 22 H 0.103 0.897 23 H 0.113 0.887 24 H 0.085 0.915 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.188 0.812 30 H 0.188 0.812 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.865 -18.277 -1.367 18.551 hybrid contribution 0.165 1.501 0.676 1.655 sum 3.029 -16.776 -0.691 17.061 Atomic orbital electron populations 1.20429 0.86011 1.03922 1.03460 1.20355 0.94609 0.84631 1.04074 1.20715 0.90885 0.96067 1.10098 1.17304 0.94066 0.86922 0.95578 1.21357 1.43971 0.97502 0.92657 0.93534 1.25867 0.95199 0.96865 1.01357 1.70084 1.46892 1.07357 1.32775 0.85542 0.77908 0.78283 0.79909 1.20423 1.20151 1.18894 1.19158 0.92900 0.93557 1.05930 1.20464 0.91063 0.99672 1.03275 1.17457 0.79312 0.91730 1.08722 1.91420 1.43884 1.83130 1.94718 1.20984 0.99831 0.90792 1.03412 1.20144 0.87235 1.00701 1.02692 1.18506 0.86170 0.92767 1.05407 1.43867 1.02639 1.06924 1.63162 1.22259 1.02227 0.77958 1.04352 0.89711 0.88726 0.91493 0.97266 0.99582 0.92712 0.87616 0.81190 0.81152 0.89795 0.88151 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.47 9.62 71.23 0.69 -1.78 16 2 C 0.07 2.60 6.83 40.87 0.28 2.88 16 3 C -0.17 -8.09 5.50 -18.62 -0.10 -8.19 16 4 C 0.10 5.55 5.05 29.10 0.15 5.69 16 5 C -0.52 -30.56 9.09 25.60 0.23 -30.33 16 6 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 C -0.11 -4.79 6.35 -20.20 -0.13 -4.92 16 14 C -0.13 -5.36 10.07 22.51 0.23 -5.13 16 15 C 0.05 1.70 7.29 22.35 0.16 1.86 16 16 F -0.15 -5.38 17.26 44.97 0.78 -4.60 16 17 C -0.13 -3.50 9.99 22.34 0.22 -3.27 16 18 C -0.09 -2.22 9.95 22.35 0.22 -2.00 16 19 C 0.08 2.66 6.81 39.00 0.27 2.92 16 20 N -0.48 -14.57 3.18 -524.65 -1.67 -16.24 16 21 C 0.07 1.20 10.80 127.77 1.38 2.58 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.09 2.10 6.92 -2.38 -0.02 2.09 16 24 H 0.07 2.46 7.66 -2.38 -0.02 2.44 16 25 H 0.01 0.53 7.69 -2.39 -0.02 0.51 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.10 1.33 6.88 -2.38 -0.02 1.31 16 Total: -1.00 -73.52 289.30 6.59 -66.93 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.11 Total: 2.31 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 4.06 Total: -38.93 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.38 Total: -73.32 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.52 6.59 -66.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.432 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds