Wall clock time and date at job start Mon Mar 30 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34251 * 125.03694 * 2 1 4 4 C 1.50700 * 126.49811 * 359.94707 * 3 2 1 5 5 C 1.50704 * 109.46727 * 270.01805 * 4 3 2 6 6 H 1.08003 * 120.00204 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99646 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00483 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47060 * 59.99736 * 9 7 5 11 11 H 1.48502 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46970 * 299.99806 * 9 7 5 13 13 C 1.46480 * 107.00939 * 179.97438 * 3 2 1 14 14 C 1.39705 * 134.01587 * 180.02562 * 13 3 2 15 15 C 1.36599 * 119.80619 * 180.02562 * 14 13 3 16 16 C 1.38840 * 120.54965 * 359.73959 * 15 14 13 17 17 C 1.37939 * 120.63212 * 0.51661 * 16 15 14 18 18 F 1.35104 * 120.12805 * 179.76315 * 17 16 15 19 19 C 1.39307 * 119.74030 * 359.49470 * 17 16 15 20 20 N 1.36787 * 125.03818 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.07342 * 0.06083 * 20 2 1 22 22 H 1.09004 * 109.47442 * 89.99896 * 1 2 3 23 23 H 1.08997 * 109.47476 * 209.99785 * 1 2 3 24 24 H 1.09005 * 109.47327 * 329.99997 * 1 2 3 25 25 H 1.09003 * 109.46724 * 30.00869 * 4 3 2 26 26 H 1.08991 * 109.47422 * 150.01450 * 4 3 2 27 27 H 0.96996 * 120.00638 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.09202 * 0.02562 * 14 13 3 29 29 H 1.08004 * 119.72274 * 180.02562 * 15 14 13 30 30 H 1.08003 * 119.68404 * 180.28669 * 16 15 14 31 31 H 1.09002 * 109.46867 * 269.98621 * 21 20 2 32 32 H 1.09003 * 109.47267 * 29.97660 * 21 20 2 33 33 H 1.08995 * 109.47231 * 149.98189 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 1.8004 2.5286 -0.0011 5 6 1.6420 3.0041 -1.4224 6 1 1.8651 2.3380 -2.2427 7 6 1.2133 4.2899 -1.6753 8 7 0.9422 5.1012 -0.6764 9 14 1.0176 4.8796 -3.4370 10 1 0.0245 4.0259 -4.1374 11 1 0.5471 6.2881 -3.4382 12 1 2.3250 4.7933 -4.1360 13 6 3.6706 0.6459 0.0006 14 6 4.9047 1.3008 0.0014 15 6 6.0601 0.5722 0.0013 16 6 6.0192 -0.8156 0.0059 17 6 4.8121 -1.4832 0.0000 18 9 4.7843 -2.8340 -0.0002 19 6 3.6220 -0.7592 -0.0001 20 7 2.2923 -1.1200 0.0005 21 6 1.7939 -2.4976 -0.0002 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 0.8409 2.5916 0.5121 26 1 2.5292 3.1555 0.5127 27 1 0.6402 6.0056 -0.8544 28 1 4.9449 2.3801 0.0020 29 1 7.0133 1.0799 0.0023 30 1 6.9413 -1.3778 0.0105 31 1 1.6697 -2.8395 1.0274 32 1 0.8337 -2.5364 -0.5145 33 1 2.5075 -3.1419 -0.5137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:42 Heat of formation + Delta-G solvation = 1.524214 kcal Electronic energy + Delta-G solvation = -17565.603583 eV Core-core repulsion = 14698.810842 eV Total energy + Delta-G solvation = -2866.792741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.57104 -40.82271 -36.77045 -33.85301 -32.10088 -30.81805 -29.51458 -28.43239 -26.62199 -25.01901 -22.74432 -21.63618 -20.84864 -18.58096 -16.76989 -16.50862 -16.21904 -15.59633 -15.41121 -14.75179 -14.62728 -14.41417 -14.15257 -12.92412 -12.83657 -12.77780 -12.40153 -12.27739 -12.13690 -11.76204 -11.53483 -11.28520 -11.11956 -10.87518 -10.66223 -10.62502 -10.23894 -9.69952 -9.43579 -8.69066 -8.36212 -7.69829 -6.83290 -5.96894 -4.00908 1.42790 1.92309 3.16159 3.25809 3.34382 3.38745 3.43436 4.25498 4.50006 4.59318 4.96751 5.00794 5.25575 5.31558 5.33626 5.36669 5.54983 5.69378 5.73899 5.86748 6.02852 6.08616 6.27691 6.43581 6.51636 6.58896 6.73842 6.98318 7.28368 7.37716 7.55706 7.61560 7.83400 7.94603 7.99048 8.42651 9.03920 9.62397 11.11202 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.007127 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.871111 B = 3927.598097 C = 4565.742329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 C -0.106 4.106 4 C 0.084 3.916 5 C -0.505 4.505 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.076 4.076 14 C -0.058 4.058 15 C -0.142 4.142 16 C -0.140 4.140 17 C 0.071 3.929 18 F -0.153 7.153 19 C 0.063 3.937 20 N -0.484 5.484 21 C 0.081 3.919 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -12.223 2.303 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.112 4.112 4 C 0.047 3.953 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.082 4.082 14 C -0.077 4.077 15 C -0.162 4.162 16 C -0.160 4.160 17 C 0.049 3.951 18 F -0.132 7.132 19 C -0.045 4.045 20 N -0.169 5.169 21 C -0.061 4.061 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.803 -12.412 2.344 13.192 hybrid contribution -0.060 -0.045 -1.055 1.057 sum 3.743 -12.457 1.289 13.071 Atomic orbital electron populations 1.20323 0.87939 1.02590 1.02766 1.20126 0.93436 0.84445 1.07539 1.21036 0.88871 0.97005 1.04264 1.17716 0.96236 0.84184 0.97203 1.21063 1.44301 0.97138 0.91819 0.92783 1.24977 0.95633 0.96753 0.96890 1.69937 1.46062 1.06988 1.30597 0.86676 0.78556 0.77629 0.85271 1.20342 1.21306 1.20241 1.19173 0.94497 0.90072 1.04460 1.20476 0.90167 1.00474 0.96551 1.20346 0.98248 0.92490 1.05085 1.20633 0.95015 0.95226 1.05146 1.16604 0.91923 0.75536 1.11042 1.91389 1.97317 1.29660 1.94858 1.18143 0.83851 0.94543 1.07959 1.43556 1.03111 1.05718 1.64506 1.21862 1.00851 0.80995 1.02379 0.90915 0.92877 0.89302 0.95351 0.95460 0.92902 0.85082 0.85663 0.85402 0.91945 0.90190 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.57 36.01 0.34 -0.94 16 2 C 0.05 0.94 6.83 -81.79 -0.56 0.38 16 3 C -0.11 -2.38 5.50 -102.71 -0.57 -2.94 16 4 C 0.08 2.14 5.26 -29.03 -0.15 1.99 16 5 C -0.50 -13.99 9.09 -34.44 -0.31 -14.31 16 6 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C -0.08 -1.60 6.35 -105.14 -0.67 -2.26 16 14 C -0.06 -1.08 10.05 -39.63 -0.40 -1.48 16 15 C -0.14 -2.20 9.97 -39.95 -0.40 -2.60 16 16 C -0.14 -2.14 9.99 -39.47 -0.39 -2.54 16 17 C 0.07 1.22 7.32 -39.29 -0.29 0.93 16 18 F -0.15 -2.47 15.83 2.25 0.04 -2.44 16 19 C 0.06 1.20 6.82 -83.91 -0.57 0.63 16 20 N -0.48 -8.68 3.18 -117.14 -0.37 -9.06 16 21 C 0.08 1.07 10.39 59.85 0.62 1.69 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.69 7.57 -51.93 -0.39 0.30 16 24 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 25 H 0.03 0.74 7.05 -51.93 -0.37 0.38 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 29 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.89 7.50 -51.93 -0.39 0.50 16 33 H 0.08 0.98 6.96 -51.93 -0.36 0.62 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -30.61 286.54 -7.70 -38.31 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.95 Total: -2.28 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.44 Total: -19.92 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.36 Total: -34.44 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.61 -7.70 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.833 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds