Wall clock time and date at job start Mon Mar 30 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34251 * 125.03694 * 2 1 4 4 C 1.50700 * 126.49811 * 359.94707 * 3 2 1 5 5 C 1.50704 * 109.46727 * 270.01805 * 4 3 2 6 6 H 1.08003 * 120.00204 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99646 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00483 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47060 * 59.99736 * 9 7 5 11 11 H 1.48502 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46970 * 299.99806 * 9 7 5 13 13 C 1.46480 * 107.00939 * 179.97438 * 3 2 1 14 14 C 1.39705 * 134.01587 * 180.02562 * 13 3 2 15 15 C 1.36599 * 119.80619 * 180.02562 * 14 13 3 16 16 C 1.38840 * 120.54965 * 359.73959 * 15 14 13 17 17 C 1.37939 * 120.63212 * 0.51661 * 16 15 14 18 18 F 1.35104 * 120.12805 * 179.76315 * 17 16 15 19 19 C 1.39307 * 119.74030 * 359.49470 * 17 16 15 20 20 N 1.36787 * 125.03818 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.07342 * 0.06083 * 20 2 1 22 22 H 1.09004 * 109.47442 * 89.99896 * 1 2 3 23 23 H 1.08997 * 109.47476 * 209.99785 * 1 2 3 24 24 H 1.09005 * 109.47327 * 329.99997 * 1 2 3 25 25 H 1.09003 * 109.46724 * 30.00869 * 4 3 2 26 26 H 1.08991 * 109.47422 * 150.01450 * 4 3 2 27 27 H 0.96996 * 120.00638 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.09202 * 0.02562 * 14 13 3 29 29 H 1.08004 * 119.72274 * 180.02562 * 15 14 13 30 30 H 1.08003 * 119.68404 * 180.28669 * 16 15 14 31 31 H 1.09002 * 109.46867 * 269.98621 * 21 20 2 32 32 H 1.09003 * 109.47267 * 29.97660 * 21 20 2 33 33 H 1.08995 * 109.47231 * 149.98189 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 1.8004 2.5286 -0.0011 5 6 1.6420 3.0041 -1.4224 6 1 1.8651 2.3380 -2.2427 7 6 1.2133 4.2899 -1.6753 8 7 0.9422 5.1012 -0.6764 9 14 1.0176 4.8796 -3.4370 10 1 0.0245 4.0259 -4.1374 11 1 0.5471 6.2881 -3.4382 12 1 2.3250 4.7933 -4.1360 13 6 3.6706 0.6459 0.0006 14 6 4.9047 1.3008 0.0014 15 6 6.0601 0.5722 0.0013 16 6 6.0192 -0.8156 0.0059 17 6 4.8121 -1.4832 0.0000 18 9 4.7843 -2.8340 -0.0002 19 6 3.6220 -0.7592 -0.0001 20 7 2.2923 -1.1200 0.0005 21 6 1.7939 -2.4976 -0.0002 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 0.8409 2.5916 0.5121 26 1 2.5292 3.1555 0.5127 27 1 0.6402 6.0056 -0.8544 28 1 4.9449 2.3801 0.0020 29 1 7.0133 1.0799 0.0023 30 1 6.9413 -1.3778 0.0105 31 1 1.6697 -2.8395 1.0274 32 1 0.8337 -2.5364 -0.5145 33 1 2.5075 -3.1419 -0.5137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:42 Heat of formation + Delta-G solvation = -14.465607 kcal Electronic energy + Delta-G solvation = -17566.296953 eV Core-core repulsion = 14698.810842 eV Total energy + Delta-G solvation = -2867.486111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.85636 -42.23539 -38.09888 -35.70696 -33.88184 -32.15943 -30.83208 -30.23796 -27.92483 -26.65419 -24.55384 -22.98818 -22.26671 -20.04861 -18.45592 -18.08076 -17.84275 -16.93807 -16.74526 -16.39135 -16.12592 -15.90642 -15.40021 -14.40630 -14.36832 -14.11339 -13.89616 -13.79570 -13.50332 -13.37096 -13.05022 -12.83442 -12.64077 -12.55449 -12.39857 -11.96039 -11.92902 -11.57039 -11.51107 -10.53319 -10.18677 -9.08025 -8.40376 -8.03541 -6.24467 0.04832 0.57804 1.40669 1.43173 1.51018 1.75220 1.86026 2.44981 2.86116 3.16826 3.26882 3.70799 3.83869 3.94265 4.05756 4.37018 4.43507 4.43796 4.53764 4.59829 4.65653 4.76060 4.92291 5.04838 5.11724 5.16252 5.28615 5.41661 5.58981 5.70554 5.81871 5.88707 6.01353 6.26957 6.32693 6.46098 6.86581 7.43092 8.95743 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.007127 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.871111 B = 3927.598097 C = 4565.742329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 C -0.163 4.163 4 C 0.101 3.899 5 C -0.517 4.517 6 H 0.045 0.955 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.273 1.273 13 C -0.107 4.107 14 C -0.088 4.088 15 C -0.123 4.123 16 C -0.129 4.129 17 C 0.067 3.933 18 F -0.145 7.145 19 C 0.046 3.954 20 N -0.484 5.484 21 C 0.073 3.927 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.009 0.991 26 H -0.005 1.005 27 H 0.264 0.736 28 H 0.117 0.883 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -14.361 1.425 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.044 4.044 3 C -0.169 4.169 4 C 0.063 3.937 5 C -0.555 4.555 6 H 0.063 0.937 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.198 1.198 13 C -0.113 4.113 14 C -0.107 4.107 15 C -0.142 4.142 16 C -0.148 4.148 17 C 0.045 3.955 18 F -0.124 7.124 19 C -0.062 4.062 20 N -0.168 5.168 21 C -0.067 4.067 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.027 0.973 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.665 -14.588 1.468 15.386 hybrid contribution -0.257 0.538 -0.729 0.941 sum 4.408 -14.050 0.739 14.744 Atomic orbital electron populations 1.20383 0.85913 1.03756 1.03349 1.20426 0.94680 0.84479 1.04825 1.20777 0.90895 0.96073 1.09134 1.17315 0.94274 0.86426 0.95645 1.21303 1.44192 0.97406 0.92604 0.93652 1.25808 0.95166 0.96804 1.01173 1.70059 1.46799 1.07353 1.32802 0.85630 0.78726 0.77389 0.80086 1.19321 1.20512 1.19797 1.19378 0.94445 0.91512 1.05929 1.20597 0.91021 1.00263 0.98829 1.20730 0.98455 0.92800 1.02204 1.21101 0.95828 0.95162 1.02727 1.16763 0.91823 0.75946 1.10927 1.91408 1.97286 1.28924 1.94785 1.18372 0.85101 0.94066 1.08647 1.43809 1.02595 1.06926 1.63453 1.22203 1.02004 0.78369 1.04093 0.90459 0.88920 0.90904 0.97284 0.98711 0.92686 0.86504 0.81983 0.81419 0.90052 0.87926 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.46 9.57 71.24 0.68 -1.78 16 2 C 0.06 2.42 6.83 40.88 0.28 2.70 16 3 C -0.16 -7.66 5.50 -18.63 -0.10 -7.76 16 4 C 0.10 5.52 5.26 29.10 0.15 5.67 16 5 C -0.52 -29.90 9.09 25.60 0.23 -29.66 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 C -0.11 -4.62 6.35 -20.20 -0.13 -4.75 16 14 C -0.09 -3.37 10.05 22.24 0.22 -3.14 16 15 C -0.12 -3.55 9.97 22.03 0.22 -3.33 16 16 C -0.13 -3.50 9.99 22.34 0.22 -3.28 16 17 C 0.07 2.16 7.32 22.46 0.16 2.32 16 18 F -0.15 -4.24 15.83 44.97 0.71 -3.52 16 19 C 0.05 1.72 6.82 39.04 0.27 1.99 16 20 N -0.48 -16.80 3.18 -524.54 -1.67 -18.47 16 21 C 0.07 1.72 10.39 127.77 1.33 3.05 16 22 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 23 H 0.09 2.18 7.57 -2.39 -0.02 2.17 16 24 H 0.07 2.57 7.04 -2.38 -0.02 2.55 16 25 H 0.01 0.51 7.05 -2.39 -0.02 0.49 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.94 7.50 -2.39 -0.02 1.92 16 33 H 0.08 1.88 6.96 -2.39 -0.02 1.87 16 Total: -1.00 -68.85 286.54 6.47 -62.38 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.11 Total: 5.69 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.00 Total: -37.01 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.38 Total: -74.17 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.71 Total: -3.52 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.85 6.47 -62.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.916 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds