Wall clock time and date at job start Mon Mar 30 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34205 * 125.04287 * 2 1 4 4 C 1.50707 * 126.49782 * 0.05945 * 3 2 1 5 5 C 1.50695 * 109.47270 * 89.99504 * 4 3 2 6 6 H 1.08003 * 119.99649 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00340 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99650 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00295 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47254 * 89.99574 * 9 7 5 11 11 H 1.48496 * 109.47018 * 209.99871 * 9 7 5 12 12 H 1.48496 * 109.47016 * 329.99994 * 9 7 5 13 13 C 1.46522 * 107.00418 * 180.02562 * 3 2 1 14 14 C 1.39635 * 133.98702 * 180.02562 * 13 3 2 15 15 C 1.36604 * 119.79960 * 179.97438 * 14 13 3 16 16 C 1.39041 * 120.49887 * 359.72219 * 15 14 13 17 17 F 1.35103 * 119.69199 * 180.27806 * 16 15 14 18 18 C 1.37938 * 120.61283 * 0.56338 * 16 15 14 19 19 C 1.39130 * 119.75884 * 359.43771 * 18 16 15 20 20 N 1.36904 * 125.03606 * 180.02562 * 2 1 3 21 21 C 1.46498 * 125.06661 * 359.97315 * 20 2 1 22 22 H 1.08993 * 109.47224 * 270.00279 * 1 2 3 23 23 H 1.09002 * 109.46908 * 29.99890 * 1 2 3 24 24 H 1.09001 * 109.47189 * 149.99712 * 1 2 3 25 25 H 1.08994 * 109.46978 * 210.00019 * 4 3 2 26 26 H 1.09005 * 109.46788 * 330.00136 * 4 3 2 27 27 H 0.97001 * 119.99740 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.10090 * 0.02562 * 14 13 3 29 29 H 1.08001 * 119.75226 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.12256 * 179.72125 * 18 16 15 31 31 H 1.09000 * 109.47535 * 270.03204 * 21 20 2 32 32 H 1.09008 * 109.47030 * 30.02944 * 21 20 2 33 33 H 1.08998 * 109.47012 * 150.02192 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 1.8004 2.5283 0.0013 5 6 1.6424 3.0039 1.4224 6 1 1.8657 2.3378 2.2427 7 6 1.2129 4.2894 1.6755 8 7 0.9406 5.1003 0.6766 9 14 1.0178 4.8792 3.4372 10 1 2.2939 5.4793 3.9025 11 1 -0.0608 5.8978 3.5016 12 1 0.6652 3.7292 4.3080 13 6 3.6708 0.6450 -0.0006 14 6 4.9040 1.3000 -0.0005 15 6 6.0596 0.5716 -0.0007 16 6 6.0177 -0.8182 0.0047 17 9 7.1706 -1.5224 0.0101 18 6 4.8100 -1.4845 -0.0013 19 6 3.6218 -0.7606 -0.0010 20 7 2.2930 -1.1210 -0.0005 21 6 1.7944 -2.4985 -0.0006 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 2.5291 3.1550 -0.5128 26 1 0.8407 2.5914 -0.5117 27 1 0.6388 6.0048 0.8547 28 1 4.9441 2.3793 0.0007 29 1 7.0130 1.0790 -0.0001 30 1 4.7867 -2.5643 -0.0015 31 1 1.6706 -2.8402 1.0271 32 1 0.8339 -2.5372 -0.5145 33 1 2.5076 -3.1430 -0.5144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:46 Heat of formation + Delta-G solvation = 1.501881 kcal Electronic energy + Delta-G solvation = -17379.330309 eV Core-core repulsion = 14512.536600 eV Total energy + Delta-G solvation = -2866.793709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.56198 -40.89927 -36.57822 -33.94069 -32.19434 -30.65555 -29.84259 -28.47681 -26.47489 -24.94983 -22.66944 -21.85573 -20.75002 -18.59873 -16.76270 -16.28056 -16.16733 -15.92439 -15.38644 -14.91031 -14.61214 -14.45007 -13.77039 -13.09308 -12.90768 -12.75923 -12.38916 -12.29581 -12.17405 -12.11625 -11.65791 -11.41770 -10.96686 -10.80595 -10.57605 -10.47417 -10.23623 -9.69141 -9.44750 -8.83515 -8.36967 -7.63121 -6.86523 -5.97713 -4.01568 1.42630 1.89305 3.14024 3.27221 3.32611 3.39287 3.44076 4.23761 4.49639 4.63626 4.92840 5.03514 5.25396 5.26726 5.34975 5.35874 5.47341 5.55956 5.70281 5.90803 5.95320 6.08821 6.28723 6.44017 6.47980 6.57799 6.67976 6.90161 7.27844 7.38902 7.54907 7.62744 7.83876 7.94941 7.98711 8.42095 9.03644 9.61881 11.10479 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.007082 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.030263 B = 3952.918140 C = 4779.173461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.040 3.960 3 C -0.100 4.100 4 C 0.082 3.918 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.108 4.108 14 C -0.022 4.022 15 C -0.195 4.195 16 C 0.106 3.894 17 F -0.148 7.148 18 C -0.175 4.175 19 C 0.117 3.883 20 N -0.488 5.488 21 C 0.082 3.918 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -12.737 -2.441 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.106 4.106 4 C 0.045 3.955 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.114 4.114 14 C -0.041 4.041 15 C -0.215 4.215 16 C 0.086 3.914 17 F -0.127 7.127 18 C -0.197 4.197 19 C 0.009 3.991 20 N -0.173 5.173 21 C -0.060 4.060 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.853 -12.897 -2.479 13.440 hybrid contribution 0.153 0.073 1.070 1.083 sum 3.006 -12.824 -1.409 13.247 Atomic orbital electron populations 1.20311 0.88043 1.02453 1.02705 1.20073 0.93348 0.84414 1.08365 1.21030 0.89000 0.96941 1.03583 1.17735 0.96254 0.84317 0.97215 1.21097 1.44171 0.97157 0.91834 0.92721 1.24982 0.95628 0.96782 0.96896 1.69953 1.46139 1.06944 1.30528 0.86613 0.77792 0.78517 0.85234 1.20668 1.21257 1.19961 1.19326 0.94300 0.91314 1.06444 1.20248 0.89620 1.00277 0.93930 1.20481 0.99477 0.91589 1.09994 1.17095 0.80452 0.89480 1.04400 1.91434 1.47797 1.79185 1.94306 1.19553 0.89061 0.99006 1.12117 1.17744 0.84111 0.93775 1.03421 1.43585 1.03325 1.05597 1.64800 1.21792 1.00655 0.81130 1.02389 0.90989 0.89415 0.92960 0.95496 0.95350 0.92963 0.84664 0.85375 0.86033 0.91879 0.90193 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 9.82 36.01 0.35 -0.88 16 2 C 0.04 0.77 6.83 -81.75 -0.56 0.21 16 3 C -0.10 -2.21 5.50 -102.70 -0.57 -2.77 16 4 C 0.08 2.08 5.26 -29.03 -0.15 1.93 16 5 C -0.50 -13.92 9.09 -34.44 -0.31 -14.23 16 6 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C -0.11 -2.23 6.35 -105.13 -0.67 -2.90 16 14 C -0.02 -0.42 10.05 -39.65 -0.40 -0.82 16 15 C -0.20 -3.22 9.95 -39.87 -0.40 -3.61 16 16 C 0.11 1.74 7.28 -39.39 -0.29 1.45 16 17 F -0.15 -2.32 17.25 2.25 0.04 -2.29 16 18 C -0.18 -2.84 9.93 -39.36 -0.39 -3.24 16 19 C 0.12 2.14 6.81 -83.99 -0.57 1.57 16 20 N -0.49 -8.21 3.18 -117.19 -0.37 -8.58 16 21 C 0.08 0.95 10.81 59.85 0.65 1.60 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 24 H 0.05 0.65 6.92 -51.93 -0.36 0.29 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.74 7.05 -51.93 -0.37 0.37 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.77 6.89 -51.92 -0.36 0.42 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -30.47 288.37 -7.62 -38.09 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.95 Total: -2.48 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -3.40 Total: -20.18 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.36 Total: -33.91 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.47 -7.62 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.594 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds