Wall clock time and date at job start Mon Mar 30 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34205 * 125.04287 * 2 1 4 4 C 1.50707 * 126.49782 * 0.05945 * 3 2 1 5 5 C 1.50695 * 109.47270 * 89.99504 * 4 3 2 6 6 H 1.08003 * 119.99649 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00340 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99650 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00295 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47254 * 89.99574 * 9 7 5 11 11 H 1.48496 * 109.47018 * 209.99871 * 9 7 5 12 12 H 1.48496 * 109.47016 * 329.99994 * 9 7 5 13 13 C 1.46522 * 107.00418 * 180.02562 * 3 2 1 14 14 C 1.39635 * 133.98702 * 180.02562 * 13 3 2 15 15 C 1.36604 * 119.79960 * 179.97438 * 14 13 3 16 16 C 1.39041 * 120.49887 * 359.72219 * 15 14 13 17 17 F 1.35103 * 119.69199 * 180.27806 * 16 15 14 18 18 C 1.37938 * 120.61283 * 0.56338 * 16 15 14 19 19 C 1.39130 * 119.75884 * 359.43771 * 18 16 15 20 20 N 1.36904 * 125.03606 * 180.02562 * 2 1 3 21 21 C 1.46498 * 125.06661 * 359.97315 * 20 2 1 22 22 H 1.08993 * 109.47224 * 270.00279 * 1 2 3 23 23 H 1.09002 * 109.46908 * 29.99890 * 1 2 3 24 24 H 1.09001 * 109.47189 * 149.99712 * 1 2 3 25 25 H 1.08994 * 109.46978 * 210.00019 * 4 3 2 26 26 H 1.09005 * 109.46788 * 330.00136 * 4 3 2 27 27 H 0.97001 * 119.99740 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.10090 * 0.02562 * 14 13 3 29 29 H 1.08001 * 119.75226 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.12256 * 179.72125 * 18 16 15 31 31 H 1.09000 * 109.47535 * 270.03204 * 21 20 2 32 32 H 1.09008 * 109.47030 * 30.02944 * 21 20 2 33 33 H 1.08998 * 109.47012 * 150.02192 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 1.8004 2.5283 0.0013 5 6 1.6424 3.0039 1.4224 6 1 1.8657 2.3378 2.2427 7 6 1.2129 4.2894 1.6755 8 7 0.9406 5.1003 0.6766 9 14 1.0178 4.8792 3.4372 10 1 2.2939 5.4793 3.9025 11 1 -0.0608 5.8978 3.5016 12 1 0.6652 3.7292 4.3080 13 6 3.6708 0.6450 -0.0006 14 6 4.9040 1.3000 -0.0005 15 6 6.0596 0.5716 -0.0007 16 6 6.0177 -0.8182 0.0047 17 9 7.1706 -1.5224 0.0101 18 6 4.8100 -1.4845 -0.0013 19 6 3.6218 -0.7606 -0.0010 20 7 2.2930 -1.1210 -0.0005 21 6 1.7944 -2.4985 -0.0006 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 2.5291 3.1550 -0.5128 26 1 0.8407 2.5914 -0.5117 27 1 0.6388 6.0048 0.8547 28 1 4.9441 2.3793 0.0007 29 1 7.0130 1.0790 -0.0001 30 1 4.7867 -2.5643 -0.0015 31 1 1.6706 -2.8402 1.0271 32 1 0.8339 -2.5372 -0.5145 33 1 2.5076 -3.1430 -0.5144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:45 Heat of formation + Delta-G solvation = -14.239232 kcal Electronic energy + Delta-G solvation = -17380.012895 eV Core-core repulsion = 14512.536600 eV Total energy + Delta-G solvation = -2867.476295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.82659 -42.28027 -37.91948 -35.73740 -33.96988 -31.95767 -31.19569 -30.21840 -27.74035 -26.58460 -24.45752 -23.18620 -22.14959 -20.03804 -18.44725 -18.06060 -17.55051 -17.23843 -16.67414 -16.45562 -16.13340 -15.82736 -15.09225 -14.44994 -14.38965 -14.32392 -13.83768 -13.75455 -13.56728 -13.40066 -13.17963 -12.99212 -12.65166 -12.56973 -12.17668 -11.96851 -11.77061 -11.51083 -11.45778 -10.53694 -10.33589 -8.99092 -8.42282 -8.03851 -6.24418 0.04849 0.52922 1.40573 1.41577 1.52199 1.79053 1.89558 2.44786 2.82924 3.16952 3.35202 3.72622 3.88965 3.97982 4.13873 4.23448 4.39181 4.47843 4.56536 4.61727 4.71296 4.82105 4.90005 5.03111 5.10992 5.19019 5.19836 5.40339 5.47872 5.71217 5.82207 5.88065 6.02011 6.28764 6.34540 6.53046 6.87316 7.43265 8.95716 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.007082 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.030263 B = 3952.918140 C = 4779.173461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.059 3.941 3 C -0.159 4.159 4 C 0.098 3.902 5 C -0.516 4.516 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.267 1.267 13 C -0.140 4.140 14 C -0.048 4.048 15 C -0.183 4.183 16 C 0.103 3.897 17 F -0.140 7.140 18 C -0.161 4.161 19 C 0.108 3.892 20 N -0.482 5.482 21 C 0.071 3.929 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.095 0.905 25 H -0.007 1.007 26 H 0.009 0.991 27 H 0.264 0.736 28 H 0.122 0.878 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -15.409 -1.609 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 C -0.165 4.165 4 C 0.061 3.939 5 C -0.554 4.554 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.192 1.192 13 C -0.145 4.145 14 C -0.067 4.067 15 C -0.203 4.203 16 C 0.083 3.917 17 F -0.119 7.119 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.166 5.166 21 C -0.069 4.069 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.011 0.989 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.967 -15.610 -1.648 15.975 hybrid contribution 0.155 0.819 0.762 1.130 sum 3.122 -14.791 -0.886 15.143 Atomic orbital electron populations 1.20377 0.86036 1.03713 1.03249 1.20368 0.94576 0.84552 1.05139 1.20751 0.90970 0.96016 1.08778 1.17338 0.94286 0.86727 0.95581 1.21344 1.43958 0.97399 0.92675 0.93589 1.25810 0.95214 0.96868 1.01121 1.70072 1.46932 1.07332 1.32724 0.85575 0.77949 0.78176 0.80136 1.20211 1.20368 1.19196 1.19556 0.94040 0.93160 1.07747 1.20249 0.90322 0.99981 0.96155 1.20672 0.99534 0.92035 1.08088 1.17128 0.80943 0.89380 1.04287 1.91458 1.47340 1.78889 1.94224 1.19818 0.87906 1.00566 1.09955 1.17903 0.85453 0.92829 1.03826 1.43838 1.02512 1.07011 1.63281 1.22235 1.02319 0.78183 1.04115 0.90641 0.91175 0.88685 0.98859 0.97258 0.92726 0.86046 0.83072 0.82644 0.90368 0.87974 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 9.82 71.24 0.70 -1.64 16 2 C 0.06 2.20 6.83 40.85 0.28 2.48 16 3 C -0.16 -7.32 5.50 -18.62 -0.10 -7.42 16 4 C 0.10 5.32 5.26 29.10 0.15 5.47 16 5 C -0.52 -29.68 9.09 25.60 0.23 -29.44 16 6 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 C -0.14 -5.90 6.35 -20.19 -0.13 -6.02 16 14 C -0.05 -1.88 10.05 22.22 0.22 -1.66 16 15 C -0.18 -5.91 9.95 22.08 0.22 -5.69 16 16 C 0.10 3.14 7.28 22.39 0.16 3.31 16 17 F -0.14 -3.97 17.25 44.97 0.78 -3.20 16 18 C -0.16 -4.74 9.93 22.41 0.22 -4.52 16 19 C 0.11 3.79 6.81 39.03 0.27 4.05 16 20 N -0.48 -15.14 3.18 -524.66 -1.67 -16.80 16 21 C 0.07 1.33 10.81 127.77 1.38 2.71 16 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 2.40 7.04 -2.39 -0.02 2.38 16 24 H 0.09 2.05 6.92 -2.39 -0.02 2.03 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.01 0.52 7.05 -2.38 -0.02 0.50 16 27 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.47 6.89 -2.38 -0.02 1.46 16 33 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -68.29 288.37 6.60 -61.69 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.11 Total: 4.82 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.07 Total: -37.47 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.38 Total: -72.48 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.29 6.60 -61.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.453 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds