Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48507 * 109.46799 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.47467 * 29.99601 * 3 2 1 6 6 H 1.48498 * 109.47346 * 150.00275 * 3 2 1 7 7 C 1.37869 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00126 * 173.69768 * 7 2 1 9 9 C 1.50703 * 120.00420 * 353.70201 * 7 2 1 10 10 C 1.53000 * 115.54706 * 86.10655 * 9 7 2 11 11 O 1.42896 * 109.47251 * 65.11523 * 10 9 7 12 12 C 1.35905 * 117.00097 * 179.97438 * 11 10 9 13 13 C 1.38732 * 120.05711 * 179.97438 * 12 11 10 14 14 C 1.38145 * 119.94425 * 179.97438 * 13 12 11 15 15 C 1.38263 * 120.05241 * 0.27666 * 14 13 12 16 16 C 1.50702 * 119.93926 * 179.72565 * 15 14 13 17 17 N 1.46897 * 109.47619 * 89.99860 * 16 15 14 18 18 C 1.38262 * 120.11330 * 359.44840 * 15 14 13 19 19 C 1.38137 * 120.05671 * 0.55218 * 18 15 14 20 20 C 1.52999 * 117.50029 * 231.78011 * 9 7 2 21 21 C 1.53000 * 117.49620 * 300.44100 * 9 7 2 22 22 H 0.97006 * 120.00045 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47478 * 305.10970 * 10 9 7 24 24 H 1.09003 * 109.46945 * 185.11360 * 10 9 7 25 25 H 1.08006 * 120.02572 * 359.95878 * 13 12 11 26 26 H 1.07995 * 119.97001 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.47184 * 209.99984 * 16 15 14 28 28 H 1.09007 * 109.47194 * 329.99631 * 16 15 14 29 29 H 1.00895 * 111.00203 * 179.97438 * 17 16 15 30 30 H 1.00900 * 110.99694 * 303.95779 * 17 16 15 31 31 H 1.08007 * 119.97191 * 180.25638 * 18 15 14 32 32 H 1.08003 * 120.02782 * 179.71026 * 19 18 15 33 33 H 1.09004 * 117.49821 * 214.99905 * 20 9 7 34 34 H 1.08996 * 117.49757 * 0.02562 * 20 9 7 35 35 H 1.09000 * 117.49793 * 359.97223 * 21 9 7 36 36 H 1.08999 * 117.49627 * 144.96951 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1443 10 6 0.7192 -3.0940 -1.1565 11 8 1.8123 -3.4600 -2.0010 12 6 1.5046 -4.0116 -3.2043 13 6 2.5168 -4.3900 -4.0744 14 6 2.2014 -4.9509 -5.2968 15 6 0.8782 -5.1300 -5.6557 16 6 0.5369 -5.7365 -6.9925 17 7 0.4427 -7.1963 -6.8583 18 6 -0.1323 -4.7590 -4.7880 19 6 0.1779 -4.1976 -3.5645 20 6 1.7341 -3.4672 1.2255 21 6 0.4254 -2.6955 1.4122 22 1 -0.4850 0.8401 -0.0004 23 1 0.0976 -2.3574 -1.6656 24 1 0.1232 -3.9781 -0.9301 25 1 3.5504 -4.2459 -3.7964 26 1 2.9889 -5.2453 -5.9746 27 1 -0.4183 -5.3410 -7.3377 28 1 1.3153 -5.4874 -7.7138 29 1 0.2143 -7.6267 -7.7418 30 1 1.2950 -7.5802 -6.4783 31 1 -1.1650 -4.9037 -5.0690 32 1 -0.6119 -3.9036 -2.8890 33 1 1.6637 -4.5335 1.0102 34 1 2.5872 -3.1654 1.8332 35 1 0.4181 -1.8865 2.1426 36 1 -0.5063 -3.2537 1.3196 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = -12.203491 kcal Electronic energy + Delta-G solvation = -17345.346327 eV Core-core repulsion = 14601.418613 eV Total energy + Delta-G solvation = -2743.927714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03357 -39.10672 -37.66985 -35.17551 -34.03124 -31.99003 -30.69740 -28.47988 -27.31990 -25.29996 -23.67871 -22.97888 -21.93012 -21.02750 -18.98851 -18.22995 -17.20032 -16.87169 -16.72328 -16.32162 -15.77055 -15.54436 -15.50388 -14.91776 -14.63931 -14.37982 -14.03680 -13.53428 -13.39563 -13.08571 -12.92080 -12.84164 -12.38366 -12.27103 -12.10954 -11.82186 -11.77307 -11.44433 -10.79488 -10.49693 -10.09590 -9.92573 -9.57474 -8.96368 -8.15591 -6.25720 0.42891 0.50081 1.39186 1.40483 1.50753 2.38117 2.44313 2.81537 3.13686 3.50282 3.85958 3.88691 3.99794 4.05111 4.16549 4.37833 4.38960 4.43197 4.48562 4.57435 4.67351 4.77277 4.81495 4.92965 4.95945 5.13259 5.17246 5.35888 5.46456 5.55792 5.57801 5.66914 5.73207 5.94289 6.26268 6.35156 6.66275 6.68801 6.78026 7.42352 8.93287 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.005115 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.971841 B = 5472.982686 C = 5828.559638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.047 0.953 9 C 0.004 3.996 10 C 0.123 3.877 11 O -0.321 6.321 12 C 0.110 3.890 13 C -0.172 4.172 14 C -0.069 4.069 15 C -0.135 4.135 16 C 0.114 3.886 17 N -0.856 5.856 18 C -0.063 4.063 19 C -0.228 4.228 20 C -0.184 4.184 21 C -0.142 4.142 22 H 0.262 0.738 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.131 0.869 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.353 0.647 30 H 0.345 0.655 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -11.096 -12.188 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.004 3.996 10 C 0.048 3.952 11 O -0.235 6.235 12 C 0.064 3.936 13 C -0.191 4.191 14 C -0.087 4.087 15 C -0.136 4.136 16 C -0.016 4.016 17 N -0.388 5.388 18 C -0.081 4.081 19 C -0.247 4.247 20 C -0.221 4.221 21 C -0.180 4.180 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.149 0.851 26 H 0.172 0.828 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.317 -10.774 -11.594 15.831 hybrid contribution 0.742 1.212 -0.228 1.439 sum 1.060 -9.562 -11.822 15.242 Atomic orbital electron populations 1.70082 1.06914 1.27292 1.50147 1.25646 0.95653 1.01869 0.94203 0.85691 0.78990 0.79673 0.78138 1.20505 1.20376 1.19335 1.20600 0.92697 0.90204 1.50928 0.93468 1.18884 1.00398 0.94512 0.85853 1.22218 0.86670 0.95748 0.90588 1.86115 1.36638 1.74827 1.25903 1.19666 0.94391 0.93316 0.86268 1.20634 0.98404 1.05219 0.94849 1.21077 0.96702 0.96300 0.94615 1.19918 0.92770 1.02985 0.97933 1.20561 1.01449 0.88222 0.91397 1.58661 1.42539 1.03986 1.33627 1.20991 1.00235 0.95065 0.91832 1.21405 0.95066 1.07743 1.00445 1.23000 0.97770 0.96478 1.04863 1.22456 0.93483 1.01074 1.00966 0.92927 0.94284 0.93626 0.85116 0.82768 0.90018 0.93116 0.83226 0.84162 0.84487 0.86422 0.89263 0.90091 0.91304 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.85 12.88 21.44 0.28 -51.57 16 2 C 0.03 1.49 5.38 84.65 0.46 1.94 16 3 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.51 -28.69 8.77 25.60 0.22 -28.46 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 9 C 0.00 0.20 1.62 -52.93 -0.09 0.12 16 10 C 0.12 5.84 4.56 71.98 0.33 6.17 16 11 O -0.32 -15.00 10.06 -92.48 -0.93 -15.94 16 12 C 0.11 4.32 6.69 22.51 0.15 4.47 16 13 C -0.17 -5.63 9.99 22.37 0.22 -5.40 16 14 C -0.07 -1.73 9.69 22.25 0.22 -1.51 16 15 C -0.14 -3.34 5.39 -19.85 -0.11 -3.45 16 16 C 0.11 1.98 6.91 85.56 0.59 2.57 16 17 N -0.86 -13.51 9.61 -190.00 -1.83 -15.34 16 18 C -0.06 -1.81 9.69 22.25 0.22 -1.60 16 19 C -0.23 -8.14 9.04 22.36 0.20 -7.94 16 20 C -0.18 -8.08 9.96 30.62 0.30 -7.78 16 21 C -0.14 -6.64 9.37 30.62 0.29 -6.36 16 22 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 23 H 0.04 2.03 7.67 -2.39 -0.02 2.01 16 24 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 25 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 26 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 28 H 0.05 0.71 8.08 -2.38 -0.02 0.70 16 29 H 0.35 3.84 9.08 -89.70 -0.81 3.03 16 30 H 0.35 5.07 8.99 -89.69 -0.81 4.26 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.12 4.33 6.30 -2.91 -0.02 4.31 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -63.72 309.16 2.02 -61.70 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.53 Total: 22.19 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 3.01 Total: -47.23 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -1.55 Total: -66.91 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.93 Total: -15.94 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.72 2.02 -61.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.496 kcal (2) G-P(sol) polarization free energy of solvation -63.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds