Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48498 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47115 * 300.00385 * 3 2 1 6 6 H 1.48502 * 109.47244 * 59.99873 * 3 2 1 7 7 C 1.37879 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00288 * 172.96000 * 7 2 1 9 9 C 1.50699 * 119.99727 * 352.95670 * 7 2 1 10 10 C 1.53004 * 115.55297 * 294.51435 * 9 7 2 11 11 O 1.42894 * 109.46959 * 275.64538 * 10 9 7 12 12 C 1.35906 * 117.00082 * 183.84750 * 11 10 9 13 13 C 1.38757 * 120.04977 * 5.00898 * 12 11 10 14 14 C 1.38131 * 119.93837 * 180.27286 * 13 12 11 15 15 C 1.38287 * 120.05516 * 359.77300 * 14 13 12 16 16 C 1.38241 * 120.11225 * 359.97438 * 15 14 13 17 17 C 1.38165 * 120.05644 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.02777 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.47270 * 255.91850 * 18 17 16 20 20 C 1.53003 * 117.51662 * 80.21701 * 9 7 2 21 21 C 1.52997 * 117.49770 * 148.84458 * 9 7 2 22 22 H 0.97000 * 119.99911 * 5.00415 * 1 2 3 23 23 H 1.09000 * 109.47193 * 155.64246 * 10 9 7 24 24 H 1.08999 * 109.46634 * 35.64020 * 10 9 7 25 25 H 1.07993 * 120.03087 * 0.02740 * 13 12 11 26 26 H 1.08001 * 119.96976 * 179.74880 * 14 13 12 27 27 H 1.07999 * 119.94353 * 179.97438 * 15 14 13 28 28 H 1.08005 * 119.97101 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.46992 * 135.91701 * 18 17 16 30 30 H 1.09002 * 109.46549 * 15.91936 * 18 17 16 31 31 H 1.00896 * 110.99841 * 179.97438 * 19 18 17 32 32 H 1.00900 * 110.99648 * 303.95902 * 19 18 17 33 33 H 1.09005 * 117.49506 * 214.96845 * 20 9 7 34 34 H 1.09000 * 117.49693 * 359.97438 * 20 9 7 35 35 H 1.09000 * 117.50262 * 359.97422 * 21 9 7 36 36 H 1.08998 * 117.50262 * 144.97761 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1152 9 6 1.2595 -2.4943 0.1589 10 6 0.5725 -2.6998 1.5105 11 8 1.5143 -3.2239 2.4487 12 6 1.0437 -3.5413 3.6836 13 6 -0.3142 -3.4506 3.9541 14 6 -0.7893 -3.7684 5.2116 15 6 0.0866 -4.1809 6.1990 16 6 1.4392 -4.2770 5.9304 17 6 1.9195 -3.9604 4.6742 18 6 3.3943 -4.0648 4.3822 19 7 3.9848 -2.7200 4.3565 20 6 0.5692 -3.0699 -1.0793 21 6 1.8378 -3.7294 -0.5346 22 1 -0.4850 0.8369 -0.0733 23 1 -0.2540 -3.4010 1.3951 24 1 0.1913 -1.7452 1.8731 25 1 -0.9985 -3.1282 3.1834 26 1 -1.8456 -3.6941 5.4239 27 1 -0.2868 -4.4285 7.1817 28 1 2.1212 -4.5999 6.7032 29 1 3.5399 -4.5441 3.4141 30 1 3.8770 -4.6590 5.1581 31 1 4.9741 -2.7632 4.1629 32 1 3.5108 -2.1297 3.6896 33 1 -0.3745 -3.5949 -0.9309 34 1 0.6534 -2.5078 -2.0094 35 1 2.7568 -3.6014 -1.1066 36 1 1.7291 -4.6883 -0.0280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = 4.798464 kcal Electronic energy + Delta-G solvation = -17978.296990 eV Core-core repulsion = 15235.106536 eV Total energy + Delta-G solvation = -2743.190454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75709 -37.38802 -35.72183 -34.42240 -32.09878 -30.30837 -29.43760 -26.68529 -25.33587 -24.53273 -21.87401 -21.24957 -20.80589 -19.15092 -17.39267 -16.44393 -15.95024 -15.25127 -15.12555 -14.68122 -14.47367 -14.12529 -14.02017 -13.72118 -13.13378 -12.76249 -12.21520 -11.95169 -11.86652 -11.61523 -11.16299 -11.02847 -11.02524 -10.56839 -10.43965 -10.29281 -10.22732 -9.58408 -8.95521 -8.66407 -8.61816 -8.30281 -8.26819 -7.62908 -6.14124 -4.18797 1.63351 1.83692 3.24027 3.33389 3.36922 3.89551 4.10769 4.33619 5.03261 5.08678 5.11883 5.22821 5.35082 5.38379 5.54554 5.63590 5.85329 5.87872 5.97274 6.06709 6.18052 6.28135 6.33029 6.51760 6.61707 6.67293 6.73549 6.78502 6.85893 6.94771 7.19244 7.30382 7.35942 7.45991 7.80210 7.80810 8.16597 8.31386 8.81094 9.45984 10.94280 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.007122 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.497509 B = 3930.673036 C = 4118.144565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.047 3.953 10 C 0.105 3.895 11 O -0.304 6.304 12 C 0.152 3.848 13 C -0.213 4.213 14 C -0.082 4.082 15 C -0.175 4.175 16 C -0.070 4.070 17 C -0.127 4.127 18 C 0.115 3.885 19 N -0.848 5.848 20 C -0.165 4.165 21 C -0.199 4.199 22 H 0.262 0.738 23 H 0.031 0.969 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.336 0.664 32 H 0.355 0.645 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -7.390 7.998 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.046 3.954 10 C 0.031 3.969 11 O -0.217 6.217 12 C 0.104 3.896 13 C -0.232 4.232 14 C -0.100 4.100 15 C -0.194 4.194 16 C -0.089 4.089 17 C -0.128 4.128 18 C -0.015 4.015 19 N -0.378 5.378 20 C -0.202 4.202 21 C -0.236 4.236 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.147 0.853 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.845 -7.220 8.712 11.347 hybrid contribution 0.143 0.784 -1.095 1.354 sum 0.988 -6.437 7.617 10.021 Atomic orbital electron populations 1.69950 1.05933 1.26988 1.49049 1.24996 0.94878 0.99111 0.94371 0.86525 0.80317 0.83485 0.77693 1.19580 1.21001 1.20763 1.20488 0.93234 0.88502 1.50498 0.91916 1.18740 0.97890 0.92120 0.86619 1.22635 0.89065 0.96787 0.88408 1.86112 1.39689 1.76994 1.18886 1.19072 0.91726 0.92810 0.85949 1.21359 0.94921 1.08017 0.98931 1.20887 0.99294 0.97167 0.92649 1.20879 0.93523 1.05653 0.99319 1.20746 0.95272 0.98068 0.94797 1.19129 0.94846 1.06144 0.92699 1.20402 0.90280 0.91092 0.99721 1.58857 1.07317 1.11952 1.59655 1.22758 0.93673 1.03554 1.00264 1.22806 0.97407 0.97033 1.06322 0.92816 0.95094 0.90368 0.85345 0.86432 0.86575 0.86058 0.94393 0.91235 0.85261 0.83155 0.91734 0.89694 0.90325 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.15 12.58 55.43 0.70 -23.46 16 2 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 3 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -13.04 8.82 -34.44 -0.30 -13.35 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.13 1.54 -155.66 -0.24 0.89 16 10 C 0.11 2.39 4.61 37.16 0.17 2.57 16 11 O -0.30 -6.47 8.87 -19.44 -0.17 -6.64 16 12 C 0.15 2.89 6.54 -39.22 -0.26 2.63 16 13 C -0.21 -3.77 9.07 -39.43 -0.36 -4.13 16 14 C -0.08 -1.22 10.04 -39.60 -0.40 -1.62 16 15 C -0.18 -2.44 10.04 -39.56 -0.40 -2.83 16 16 C -0.07 -1.02 9.66 -39.61 -0.38 -1.41 16 17 C -0.13 -2.14 5.43 -104.47 -0.57 -2.71 16 18 C 0.12 1.78 6.54 -4.97 -0.03 1.74 16 19 N -0.85 -13.40 9.61 -11.41 -0.11 -13.51 16 20 C -0.16 -3.72 9.88 -26.73 -0.26 -3.99 16 21 C -0.20 -4.28 9.88 -26.73 -0.26 -4.55 16 22 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 23 H 0.03 0.66 6.97 -51.93 -0.36 0.30 16 24 H 0.08 1.96 7.18 -51.93 -0.37 1.59 16 25 H 0.13 2.29 6.28 -52.49 -0.33 1.96 16 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.46 8.01 -52.48 -0.42 1.04 16 29 H 0.04 0.62 7.99 -51.93 -0.41 0.20 16 30 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 31 H 0.34 4.48 9.08 -39.29 -0.36 4.13 16 32 H 0.35 6.44 8.36 -39.29 -0.33 6.12 16 33 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 34 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -27.75 305.79 -8.46 -36.21 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.08 Total: 11.99 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.39 Total: -24.97 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.59 Total: -36.96 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.17 Total: -6.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.75 -8.46 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds