Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48498 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47115 * 300.00385 * 3 2 1 6 6 H 1.48502 * 109.47244 * 59.99873 * 3 2 1 7 7 C 1.37879 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00288 * 172.96000 * 7 2 1 9 9 C 1.50699 * 119.99727 * 352.95670 * 7 2 1 10 10 C 1.53004 * 115.55297 * 294.51435 * 9 7 2 11 11 O 1.42894 * 109.46959 * 275.64538 * 10 9 7 12 12 C 1.35906 * 117.00082 * 183.84750 * 11 10 9 13 13 C 1.38757 * 120.04977 * 5.00898 * 12 11 10 14 14 C 1.38131 * 119.93837 * 180.27286 * 13 12 11 15 15 C 1.38287 * 120.05516 * 359.77300 * 14 13 12 16 16 C 1.38241 * 120.11225 * 359.97438 * 15 14 13 17 17 C 1.38165 * 120.05644 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.02777 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.47270 * 255.91850 * 18 17 16 20 20 C 1.53003 * 117.51662 * 80.21701 * 9 7 2 21 21 C 1.52997 * 117.49770 * 148.84458 * 9 7 2 22 22 H 0.97000 * 119.99911 * 5.00415 * 1 2 3 23 23 H 1.09000 * 109.47193 * 155.64246 * 10 9 7 24 24 H 1.08999 * 109.46634 * 35.64020 * 10 9 7 25 25 H 1.07993 * 120.03087 * 0.02740 * 13 12 11 26 26 H 1.08001 * 119.96976 * 179.74880 * 14 13 12 27 27 H 1.07999 * 119.94353 * 179.97438 * 15 14 13 28 28 H 1.08005 * 119.97101 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.46992 * 135.91701 * 18 17 16 30 30 H 1.09002 * 109.46549 * 15.91936 * 18 17 16 31 31 H 1.00896 * 110.99841 * 179.97438 * 19 18 17 32 32 H 1.00900 * 110.99648 * 303.95902 * 19 18 17 33 33 H 1.09005 * 117.49506 * 214.96845 * 20 9 7 34 34 H 1.09000 * 117.49693 * 359.97438 * 20 9 7 35 35 H 1.09000 * 117.50262 * 359.97422 * 21 9 7 36 36 H 1.08998 * 117.50262 * 144.97761 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1152 9 6 1.2595 -2.4943 0.1589 10 6 0.5725 -2.6998 1.5105 11 8 1.5143 -3.2239 2.4487 12 6 1.0437 -3.5413 3.6836 13 6 -0.3142 -3.4506 3.9541 14 6 -0.7893 -3.7684 5.2116 15 6 0.0866 -4.1809 6.1990 16 6 1.4392 -4.2770 5.9304 17 6 1.9195 -3.9604 4.6742 18 6 3.3943 -4.0648 4.3822 19 7 3.9848 -2.7200 4.3565 20 6 0.5692 -3.0699 -1.0793 21 6 1.8378 -3.7294 -0.5346 22 1 -0.4850 0.8369 -0.0733 23 1 -0.2540 -3.4010 1.3951 24 1 0.1913 -1.7452 1.8731 25 1 -0.9985 -3.1282 3.1834 26 1 -1.8456 -3.6941 5.4239 27 1 -0.2868 -4.4285 7.1817 28 1 2.1212 -4.5999 6.7032 29 1 3.5399 -4.5441 3.4141 30 1 3.8770 -4.6590 5.1581 31 1 4.9741 -2.7632 4.1629 32 1 3.5108 -2.1297 3.6896 33 1 -0.3745 -3.5949 -0.9309 34 1 0.6534 -2.5078 -2.0094 35 1 2.7568 -3.6014 -1.1066 36 1 1.7291 -4.6883 -0.0280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -11.517866 kcal Electronic energy + Delta-G solvation = -17979.004519 eV Core-core repulsion = 15235.106536 eV Total energy + Delta-G solvation = -2743.897983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13075 -38.95115 -37.35764 -35.64310 -34.12126 -31.53482 -30.74293 -28.42676 -27.28744 -25.74904 -23.26356 -22.97102 -22.08828 -20.98142 -18.79237 -18.29657 -17.19937 -16.88622 -16.70192 -16.33909 -15.88755 -15.61484 -15.28206 -15.15958 -14.82366 -14.09870 -13.79936 -13.43814 -13.31804 -13.03613 -12.93221 -12.88047 -12.40755 -12.31377 -12.13582 -11.90886 -11.66733 -11.42069 -10.86223 -10.55483 -10.14519 -9.89273 -9.54815 -8.97635 -8.17037 -6.26902 0.41397 0.58040 1.37455 1.41851 1.51443 2.37025 2.40122 2.86263 3.08488 3.54413 3.83903 3.92554 3.99188 4.12939 4.20955 4.35413 4.42832 4.43641 4.50387 4.62956 4.70391 4.75367 4.80828 4.90573 4.98094 5.13589 5.15003 5.44525 5.51793 5.52176 5.57655 5.64322 5.74885 5.99587 6.17414 6.32661 6.55210 6.68178 6.75807 7.39945 8.90981 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.007122 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.497509 B = 3930.673036 C = 4118.144565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.506 4.506 8 H 0.052 0.948 9 C 0.016 3.984 10 C 0.126 3.874 11 O -0.318 6.318 12 C 0.114 3.886 13 C -0.233 4.233 14 C -0.084 4.084 15 C -0.163 4.163 16 C -0.069 4.069 17 C -0.138 4.138 18 C 0.116 3.884 19 N -0.849 5.849 20 C -0.163 4.163 21 C -0.177 4.177 22 H 0.263 0.737 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.023 0.977 30 H 0.099 0.901 31 H 0.348 0.652 32 H 0.338 0.662 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -8.280 9.960 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.015 3.985 10 C 0.051 3.949 11 O -0.231 6.231 12 C 0.068 3.932 13 C -0.251 4.251 14 C -0.102 4.102 15 C -0.181 4.181 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.014 4.014 19 N -0.379 5.379 20 C -0.201 4.201 21 C -0.214 4.214 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.162 0.838 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.202 -8.129 10.684 13.479 hybrid contribution 0.029 0.992 -1.583 1.868 sum 1.232 -7.137 9.101 11.631 Atomic orbital electron populations 1.70039 1.06959 1.27566 1.49817 1.25630 0.95611 1.01837 0.94190 0.85641 0.79286 0.79989 0.77610 1.19225 1.20388 1.20832 1.20705 0.92973 0.90083 1.50547 0.92977 1.18854 0.99359 0.92462 0.87819 1.22142 0.89228 0.95385 0.88143 1.86053 1.39393 1.77712 1.19957 1.19445 0.92935 0.95206 0.85648 1.21441 0.94414 1.09140 1.00152 1.21242 1.01067 0.96294 0.91644 1.21360 0.93051 1.03234 1.00463 1.21182 0.96351 0.96857 0.94381 1.19447 0.95259 1.06075 0.93135 1.20475 0.89991 0.90950 0.99980 1.58891 1.08098 1.12002 1.58879 1.22713 0.94853 1.03534 0.99022 1.22790 0.96933 0.96662 1.05014 0.92833 0.94520 0.93706 0.86753 0.83797 0.82756 0.82845 0.95862 0.88319 0.83905 0.85009 0.90381 0.90953 0.90030 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.75 12.58 21.45 0.27 -50.48 16 2 C 0.03 1.52 5.24 84.66 0.44 1.96 16 3 Si 0.95 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.51 -27.57 8.82 25.60 0.23 -27.34 16 8 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 9 C 0.02 0.77 1.54 -52.93 -0.08 0.68 16 10 C 0.13 5.92 4.61 71.98 0.33 6.26 16 11 O -0.32 -13.89 8.87 -92.49 -0.82 -14.71 16 12 C 0.11 4.36 6.54 22.51 0.15 4.51 16 13 C -0.23 -8.24 9.07 22.37 0.20 -8.04 16 14 C -0.08 -2.34 10.04 22.26 0.22 -2.12 16 15 C -0.16 -3.91 10.04 22.28 0.22 -3.69 16 16 C -0.07 -1.79 9.66 22.25 0.22 -1.58 16 17 C -0.14 -4.46 5.43 -19.77 -0.11 -4.57 16 18 C 0.12 3.42 6.54 85.56 0.56 3.98 16 19 N -0.85 -26.24 9.61 -190.00 -1.83 -28.07 16 20 C -0.16 -7.45 9.88 30.60 0.30 -7.15 16 21 C -0.18 -7.60 9.88 30.59 0.30 -7.30 16 22 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 23 H 0.04 1.63 6.97 -2.39 -0.02 1.61 16 24 H 0.04 2.37 7.18 -2.39 -0.02 2.35 16 25 H 0.11 4.25 6.28 -2.91 -0.02 4.23 16 26 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.15 2.95 8.01 -2.91 -0.02 2.92 16 29 H 0.02 0.75 7.99 -2.39 -0.02 0.73 16 30 H 0.10 2.29 7.96 -2.39 -0.02 2.27 16 31 H 0.35 8.98 9.08 -89.70 -0.81 8.17 16 32 H 0.34 12.49 8.36 -89.69 -0.75 11.74 16 33 H 0.08 3.29 8.06 -2.38 -0.02 3.27 16 34 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -60.33 305.79 2.16 -58.17 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.48 Total: 34.17 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 2.99 Total: -44.38 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.56 Total: -78.55 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.82 Total: -14.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.33 2.16 -58.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.649 kcal (2) G-P(sol) polarization free energy of solvation -60.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds