Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46985 * 300.00178 * 3 2 1 6 6 H 1.48497 * 109.46926 * 59.99764 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00111 * 175.14741 * 7 2 1 9 9 C 1.50705 * 119.99623 * 355.42373 * 7 2 1 10 10 C 1.53005 * 115.54910 * 274.92344 * 9 7 2 11 11 N 1.46893 * 109.47502 * 294.80963 * 10 9 7 12 12 O 1.46300 * 111.00273 * 185.40479 * 11 10 9 13 13 C 1.42902 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46709 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99935 * 269.72405 * 14 13 12 16 16 C 1.38235 * 120.00183 * 179.76867 * 15 14 13 17 17 C 1.38236 * 119.99742 * 0.48214 * 16 15 14 18 18 C 1.38237 * 120.00038 * 359.79450 * 17 16 15 19 19 C 1.38235 * 120.00072 * 89.99517 * 14 13 12 20 20 C 1.52999 * 117.49797 * 129.26103 * 9 7 2 21 21 C 1.52993 * 117.50138 * 60.59710 * 9 7 2 22 22 H 0.96992 * 119.99726 * 5.00441 * 1 2 3 23 23 H 1.09003 * 109.46657 * 54.80753 * 10 9 7 24 24 H 1.08998 * 109.46778 * 174.80122 * 10 9 7 25 25 H 1.00898 * 111.00501 * 61.44279 * 11 10 9 26 26 H 1.08998 * 109.47159 * 299.99315 * 13 12 11 27 27 H 1.08998 * 109.47700 * 59.99984 * 13 12 11 28 28 H 1.08005 * 119.99733 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.99918 * 180.24981 * 16 15 14 30 30 H 1.07999 * 119.99780 * 179.76923 * 17 16 15 31 31 H 1.08001 * 119.99794 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.00261 * 0.02562 * 19 14 13 33 33 H 1.09001 * 117.49905 * 359.97438 * 20 9 7 34 34 H 1.08995 * 117.49658 * 145.01561 * 20 9 7 35 35 H 1.08998 * 117.50212 * 214.97671 * 21 9 7 36 36 H 1.08999 * 117.49991 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1053 10 6 0.9189 -2.9527 1.5267 11 7 2.1613 -3.2474 2.2529 12 8 1.8763 -3.8077 3.5740 13 6 3.0435 -4.1194 4.3373 14 6 2.6340 -4.6860 5.6723 15 6 2.4420 -3.8435 6.7513 16 6 2.0618 -4.3627 7.9747 17 6 1.8832 -5.7256 8.1217 18 6 2.0807 -6.5687 7.0442 19 6 2.4558 -6.0489 5.8194 20 6 1.5732 -3.5803 -0.9272 21 6 0.2454 -2.8218 -0.9977 22 1 -0.4849 0.8368 -0.0733 23 1 0.3753 -2.1615 2.0430 24 1 0.3013 -3.8498 1.4842 25 1 2.7411 -2.4248 2.3264 26 1 3.6441 -4.8530 3.7996 27 1 3.6293 -3.2133 4.4918 28 1 2.5859 -2.7791 6.6376 29 1 1.9079 -3.7040 8.8166 30 1 1.5897 -6.1316 9.0784 31 1 1.9415 -7.6336 7.1592 32 1 2.6104 -6.7077 4.9777 33 1 2.3248 -3.3505 -1.6824 34 1 1.5430 -4.6176 -0.5938 35 1 -0.6577 -3.3605 -0.7108 36 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = 45.254130 kcal Electronic energy + Delta-G solvation = -17030.219945 eV Core-core repulsion = 14288.783781 eV Total energy + Delta-G solvation = -2741.436164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24906 -36.98557 -35.92102 -32.33511 -31.94266 -30.92630 -30.32577 -25.87680 -25.37977 -23.62849 -22.59403 -21.23122 -20.97726 -19.12683 -16.88750 -16.45763 -15.98437 -15.46379 -15.29837 -14.68221 -14.31286 -14.05073 -13.65842 -13.44782 -13.10640 -12.85137 -12.60406 -12.24349 -11.61393 -11.39197 -11.11880 -11.01387 -10.96688 -10.94737 -10.47067 -10.15241 -9.93509 -9.44980 -8.94716 -8.91438 -8.84659 -8.46405 -8.21933 -7.73066 -6.07713 -4.17252 1.24942 1.37683 3.23281 3.31278 3.32885 3.36098 3.89400 4.34880 4.83158 4.88140 4.98017 5.11745 5.19859 5.37032 5.41549 5.47020 5.66711 5.77292 5.91743 5.96717 6.03465 6.21991 6.41609 6.43838 6.45011 6.52565 6.63873 6.73450 6.77168 6.86637 6.95771 7.16160 7.43383 7.48652 7.64341 7.82426 8.04700 8.40352 8.87301 9.50011 10.99232 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.004612 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.316414 B = 6069.565451 C = 6682.114828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.045 3.955 10 C 0.096 3.904 11 N -0.488 5.488 12 O -0.269 6.269 13 C 0.103 3.897 14 C -0.080 4.080 15 C -0.101 4.101 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.098 4.098 20 C -0.201 4.201 21 C -0.146 4.146 22 H 0.260 0.740 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.339 0.661 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -8.751 12.175 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.043 3.957 10 C -0.033 4.033 11 N -0.161 5.161 12 O -0.274 6.274 13 C 0.025 3.975 14 C -0.082 4.082 15 C -0.119 4.119 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.239 4.239 21 C -0.185 4.185 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.019 -9.282 12.038 15.724 hybrid contribution 0.175 1.909 0.389 1.956 sum 4.194 -7.373 12.428 15.047 Atomic orbital electron populations 1.70015 1.05898 1.26692 1.48676 1.25037 0.94827 0.99003 0.94428 0.86586 0.80306 0.83802 0.77663 1.19572 1.20945 1.21015 1.20522 0.92916 0.88657 1.51789 0.91935 1.18637 0.99021 0.93111 0.84891 1.21764 0.89279 0.97931 0.94328 1.66936 1.17920 1.36161 0.95106 1.90787 1.27245 1.82401 1.26979 1.21078 0.89337 0.98840 0.88202 1.19759 1.00283 0.93698 0.94440 1.21133 0.98400 0.99747 0.92647 1.21129 1.00356 0.95424 0.97433 1.21154 1.00208 0.93753 0.98763 1.21140 1.00391 0.99754 0.93103 1.21127 0.98225 0.94776 0.97482 1.22942 0.99896 0.95932 1.05082 1.22506 0.90966 1.01549 1.03431 0.92981 0.93996 0.92853 0.84486 0.92074 0.93011 0.85947 0.86088 0.86246 0.86053 0.85724 0.90601 0.91426 0.92010 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 12.65 55.43 0.70 -23.75 16 2 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.23 8.33 -34.44 -0.29 -13.52 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.04 1.09 1.65 -155.66 -0.26 0.84 16 10 C 0.10 2.25 6.07 -3.83 -0.02 2.23 16 11 N -0.49 -10.29 7.30 -10.37 -0.08 -10.37 16 12 O -0.27 -5.31 11.27 -13.92 -0.16 -5.46 16 13 C 0.10 1.60 6.52 36.01 0.23 1.83 16 14 C -0.08 -1.13 5.51 -104.62 -0.58 -1.71 16 15 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 16 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 17 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 18 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 19 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 20 C -0.20 -4.47 9.96 -26.69 -0.27 -4.73 16 21 C -0.15 -3.47 9.14 -26.69 -0.24 -3.71 16 22 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 23 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 1.22 8.09 -51.93 -0.42 0.80 16 25 H 0.34 7.08 8.49 -39.29 -0.33 6.75 16 26 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 27 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -28.70 314.11 -8.66 -37.36 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.37 Total: 7.48 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -3.48 Total: -25.55 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.63 Total: -34.12 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.16 Total: -5.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.70 -8.66 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.615 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds