Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46985 * 300.00178 * 3 2 1 6 6 H 1.48497 * 109.46926 * 59.99764 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00111 * 175.14741 * 7 2 1 9 9 C 1.50705 * 119.99623 * 355.42373 * 7 2 1 10 10 C 1.53005 * 115.54910 * 274.92344 * 9 7 2 11 11 N 1.46893 * 109.47502 * 294.80963 * 10 9 7 12 12 O 1.46300 * 111.00273 * 185.40479 * 11 10 9 13 13 C 1.42902 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46709 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99935 * 269.72405 * 14 13 12 16 16 C 1.38235 * 120.00183 * 179.76867 * 15 14 13 17 17 C 1.38236 * 119.99742 * 0.48214 * 16 15 14 18 18 C 1.38237 * 120.00038 * 359.79450 * 17 16 15 19 19 C 1.38235 * 120.00072 * 89.99517 * 14 13 12 20 20 C 1.52999 * 117.49797 * 129.26103 * 9 7 2 21 21 C 1.52993 * 117.50138 * 60.59710 * 9 7 2 22 22 H 0.96992 * 119.99726 * 5.00441 * 1 2 3 23 23 H 1.09003 * 109.46657 * 54.80753 * 10 9 7 24 24 H 1.08998 * 109.46778 * 174.80122 * 10 9 7 25 25 H 1.00898 * 111.00501 * 61.44279 * 11 10 9 26 26 H 1.08998 * 109.47159 * 299.99315 * 13 12 11 27 27 H 1.08998 * 109.47700 * 59.99984 * 13 12 11 28 28 H 1.08005 * 119.99733 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.99918 * 180.24981 * 16 15 14 30 30 H 1.07999 * 119.99780 * 179.76923 * 17 16 15 31 31 H 1.08001 * 119.99794 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.00261 * 0.02562 * 19 14 13 33 33 H 1.09001 * 117.49905 * 359.97438 * 20 9 7 34 34 H 1.08995 * 117.49658 * 145.01561 * 20 9 7 35 35 H 1.08998 * 117.50212 * 214.97671 * 21 9 7 36 36 H 1.08999 * 117.49991 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1053 10 6 0.9189 -2.9527 1.5267 11 7 2.1613 -3.2474 2.2529 12 8 1.8763 -3.8077 3.5740 13 6 3.0435 -4.1194 4.3373 14 6 2.6340 -4.6860 5.6723 15 6 2.4420 -3.8435 6.7513 16 6 2.0618 -4.3627 7.9747 17 6 1.8832 -5.7256 8.1217 18 6 2.0807 -6.5687 7.0442 19 6 2.4558 -6.0489 5.8194 20 6 1.5732 -3.5803 -0.9272 21 6 0.2454 -2.8218 -0.9977 22 1 -0.4849 0.8368 -0.0733 23 1 0.3753 -2.1615 2.0430 24 1 0.3013 -3.8498 1.4842 25 1 2.7411 -2.4248 2.3264 26 1 3.6441 -4.8530 3.7996 27 1 3.6293 -3.2133 4.4918 28 1 2.5859 -2.7791 6.6376 29 1 1.9079 -3.7040 8.8166 30 1 1.5897 -6.1316 9.0784 31 1 1.9415 -7.6336 7.1592 32 1 2.6104 -6.7077 4.9777 33 1 2.3248 -3.3505 -1.6824 34 1 1.5430 -4.6176 -0.5938 35 1 -0.6577 -3.3605 -0.7108 36 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = 30.166146 kcal Electronic energy + Delta-G solvation = -17030.874209 eV Core-core repulsion = 14288.783781 eV Total energy + Delta-G solvation = -2742.090428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18734 -38.78323 -37.44814 -34.05678 -33.57691 -31.81068 -31.72972 -27.70402 -26.77439 -25.38715 -23.48686 -22.83778 -22.21913 -21.04577 -18.16783 -17.89681 -17.69063 -16.72201 -16.60155 -16.36167 -15.72053 -15.69240 -15.05997 -14.73670 -14.35038 -14.15814 -13.88861 -13.52582 -13.41978 -13.03324 -12.96578 -12.85779 -12.32955 -12.04899 -11.98877 -11.92712 -11.44937 -11.27107 -10.88311 -10.43779 -10.07240 -9.84275 -9.78470 -9.47080 -8.11452 -6.26340 0.29710 0.48077 1.39692 1.43538 1.53774 1.86842 2.41181 2.90241 3.15733 3.54357 3.88661 3.91060 4.13390 4.17462 4.28087 4.33804 4.47899 4.50673 4.56386 4.66222 4.67117 4.76330 4.84141 4.98625 5.05483 5.05932 5.14317 5.27670 5.53353 5.57752 5.58322 5.65917 5.67396 5.75736 5.81766 6.08354 6.38899 6.42882 6.83324 7.43747 8.95427 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.004612 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.316414 B = 6069.565451 C = 6682.114828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.020 3.980 10 C 0.111 3.889 11 N -0.486 5.486 12 O -0.281 6.281 13 C 0.100 3.900 14 C -0.105 4.105 15 C -0.118 4.118 16 C -0.129 4.129 17 C -0.118 4.118 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.176 4.176 21 C -0.151 4.151 22 H 0.260 0.740 23 H 0.009 0.991 24 H 0.056 0.944 25 H 0.338 0.662 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -9.672 13.568 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.019 4.019 11 N -0.157 5.157 12 O -0.289 6.289 13 C 0.023 3.977 14 C -0.107 4.107 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.136 4.136 18 C -0.145 4.145 19 C -0.130 4.130 20 C -0.213 4.213 21 C -0.189 4.189 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.075 0.925 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.736 -10.211 13.422 17.517 hybrid contribution -0.023 2.104 0.063 2.105 sum 4.713 -8.107 13.485 16.425 Atomic orbital electron populations 1.70124 1.07204 1.27334 1.49801 1.25724 0.95527 1.02051 0.94237 0.85616 0.79423 0.79913 0.77393 1.18740 1.20778 1.21072 1.20752 0.92896 0.89789 1.51333 0.92296 1.18739 0.99887 0.93642 0.85840 1.21474 0.89798 0.96735 0.93846 1.66814 1.16511 1.35688 0.96649 1.90767 1.29649 1.82293 1.26179 1.21284 0.88279 0.99431 0.88680 1.19752 1.02480 0.94624 0.93800 1.21297 0.99147 0.99851 0.93375 1.21460 0.99494 0.96422 0.97351 1.21584 0.98655 0.93393 0.99930 1.21496 0.99281 1.01335 0.92414 1.21318 0.98664 0.94344 0.98707 1.22926 0.98591 0.96241 1.03581 1.22420 0.92075 1.01741 1.02705 0.93091 0.97256 0.92522 0.84634 0.91459 0.92345 0.85975 0.83768 0.83132 0.83404 0.85305 0.90251 0.89466 0.91052 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.35 12.65 21.45 0.27 -51.08 16 2 C 0.03 1.36 5.43 84.65 0.46 1.82 16 3 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.51 -27.03 8.33 25.60 0.21 -26.81 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.02 0.98 1.65 -52.93 -0.09 0.90 16 10 C 0.11 5.26 6.07 86.31 0.52 5.78 16 11 N -0.49 -20.50 7.30 -186.72 -1.36 -21.87 16 12 O -0.28 -11.14 11.27 -50.16 -0.57 -11.71 16 13 C 0.10 3.09 6.52 71.24 0.46 3.56 16 14 C -0.11 -2.91 5.51 -19.86 -0.11 -3.02 16 15 C -0.12 -2.98 9.70 22.27 0.22 -2.76 16 16 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 17 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 18 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 19 C -0.11 -2.72 9.70 22.27 0.22 -2.50 16 20 C -0.18 -7.63 9.96 30.62 0.30 -7.32 16 21 C -0.15 -7.17 9.14 30.62 0.28 -6.89 16 22 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 2.59 8.09 -2.39 -0.02 2.57 16 25 H 0.34 14.23 8.49 -89.70 -0.76 13.47 16 26 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 27 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 28 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.06 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -60.76 314.11 3.82 -56.94 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.29 Total: 27.03 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.15 Total: -43.79 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.09 Total: -72.95 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.57 Total: -11.71 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.76 3.82 -56.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.108 kcal (2) G-P(sol) polarization free energy of solvation -60.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds