Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48501 * 109.46900 * 239.99824 * 3 2 1 5 5 H 1.48502 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99905 * 3 2 1 7 7 C 1.37876 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00262 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47116 * 183.83522 * 9 7 2 11 11 C 1.46899 * 111.00032 * 198.49032 * 10 9 7 12 12 C 1.50701 * 109.47438 * 170.00128 * 11 10 9 13 13 C 1.38265 * 119.94341 * 269.72507 * 12 11 10 14 14 C 1.38149 * 120.05506 * 179.72272 * 13 12 11 15 15 C 1.38730 * 119.94146 * 0.57054 * 14 13 12 16 16 O 1.35902 * 120.05549 * 179.67899 * 15 14 13 17 17 C 1.38737 * 119.89021 * 359.70511 * 15 14 13 18 18 C 1.38141 * 119.94137 * 359.97438 * 17 15 14 19 19 C 1.46896 * 111.00210 * 74.53635 * 10 9 7 20 20 C 1.52998 * 117.50204 * 267.21444 * 19 10 9 21 21 C 1.52997 * 60.00002 * 252.50623 * 20 19 10 22 22 H 0.97007 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46756 * 63.83830 * 9 7 2 24 24 H 1.08995 * 109.47018 * 303.83916 * 9 7 2 25 25 H 1.09000 * 109.47303 * 290.00026 * 11 10 9 26 26 H 1.08998 * 109.47331 * 50.00057 * 11 10 9 27 27 H 1.07997 * 119.97375 * 359.97438 * 13 12 11 28 28 H 1.07997 * 120.03024 * 180.25828 * 14 13 12 29 29 H 0.96697 * 114.00074 * 270.02330 * 16 15 14 30 30 H 1.07993 * 120.02771 * 179.97438 * 17 15 14 31 31 H 1.08005 * 119.97205 * 180.02562 * 18 17 15 32 32 H 1.09004 * 115.54871 * 52.91477 * 19 10 9 33 33 H 1.09005 * 117.49499 * 359.97438 * 20 19 10 34 34 H 1.09000 * 117.50388 * 145.01763 * 20 19 10 35 35 H 1.09001 * 117.49767 * 252.50941 * 21 20 19 36 36 H 1.08999 * 117.51826 * 107.47738 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6142 0.0938 11 6 1.5814 -4.8741 -0.3359 12 6 2.6402 -5.9389 -0.4623 13 6 3.2924 -6.1241 -1.6673 14 6 4.2675 -7.0958 -1.7842 15 6 4.5837 -7.8939 -0.6944 16 8 5.5380 -8.8548 -0.8086 17 6 3.9238 -7.7099 0.5120 18 6 2.9543 -6.7325 0.6255 19 6 2.7444 -3.7316 1.4542 20 6 4.0546 -3.0024 1.7582 21 6 4.0390 -4.5271 1.6329 22 1 -0.4850 0.8401 -0.0004 23 1 0.6771 -2.5874 -0.9221 24 1 0.5733 -2.5275 0.8538 25 1 0.8407 -5.1839 0.4013 26 1 1.0951 -4.7289 -1.3006 27 1 3.0422 -5.5060 -2.5168 28 1 4.7796 -7.2373 -2.7244 29 1 5.1980 -9.7153 -1.0898 30 1 4.1680 -8.3303 1.3616 31 1 2.4405 -6.5886 1.5646 32 1 2.0037 -3.7898 2.2517 33 1 4.5149 -2.4359 0.9486 34 1 4.1762 -2.5806 2.7559 35 1 4.1502 -5.1085 2.5482 36 1 4.4885 -4.9638 0.7411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084221618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = 16.658954 kcal Electronic energy + Delta-G solvation = -17796.409444 eV Core-core repulsion = 15053.733300 eV Total energy + Delta-G solvation = -2742.676144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79765 -37.90436 -36.25145 -33.78848 -32.44885 -30.83368 -30.16124 -26.81961 -24.37317 -22.79381 -22.15829 -21.57737 -21.17265 -19.48216 -18.32154 -16.58548 -15.63160 -15.60039 -15.26577 -14.68818 -14.55262 -14.32220 -13.77274 -13.51346 -13.27396 -12.60039 -12.38342 -12.03629 -11.66096 -11.49326 -11.23604 -11.02839 -10.80356 -10.72283 -10.59985 -10.33297 -10.02020 -9.61913 -9.23631 -9.20094 -8.73163 -8.40785 -8.21601 -7.30733 -5.99066 -3.99152 1.39381 1.54105 3.35820 3.39473 3.42778 3.76892 4.27508 4.46006 4.56291 4.87070 5.03673 5.10779 5.19312 5.36363 5.58122 5.60362 5.64854 5.72242 5.88144 5.94174 6.08032 6.18586 6.20799 6.22966 6.40089 6.49527 6.55696 6.67199 6.88763 6.91707 6.97305 7.19013 7.34700 7.67732 7.85135 8.10113 8.20486 8.55049 9.08509 9.64477 11.11670 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.005320 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.248707 B = 5262.228860 C = 5389.188303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.196 3.804 10 N -0.505 5.505 11 C 0.092 3.908 12 C -0.067 4.067 13 C -0.086 4.086 14 C -0.149 4.149 15 C 0.090 3.910 16 O -0.503 6.503 17 C -0.152 4.152 18 C -0.083 4.083 19 C 0.032 3.968 20 C -0.153 4.153 21 C -0.184 4.184 22 H 0.261 0.739 23 H 0.027 0.973 24 H -0.004 1.004 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.384 0.616 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -15.436 0.000 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.072 3.928 10 N -0.229 5.229 11 C -0.036 4.036 12 C -0.068 4.068 13 C -0.105 4.105 14 C -0.168 4.168 15 C 0.046 3.954 16 O -0.312 6.312 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.077 4.077 20 C -0.191 4.191 21 C -0.221 4.221 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.014 0.986 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.238 0.762 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.295 -14.733 -0.146 16.022 hybrid contribution -0.555 0.471 0.448 0.855 sum 5.740 -14.261 0.303 15.376 Atomic orbital electron populations 1.69948 1.06030 1.26755 1.51562 1.24971 0.94823 0.99190 0.95708 0.86588 0.79441 0.82911 0.78632 1.20255 1.21467 1.20303 1.21128 0.93648 0.89550 1.49198 0.91705 1.19746 0.89663 0.87269 0.96161 1.61981 1.37884 1.02476 1.20604 1.21007 0.92642 0.89227 1.00700 1.19974 0.97905 0.95724 0.93149 1.20948 0.95035 0.96597 0.97888 1.21341 0.98870 0.98188 0.98400 1.18430 0.90978 0.92753 0.93244 1.84835 1.33645 1.22039 1.90678 1.21273 0.97473 1.00731 0.97546 1.20911 0.96811 0.94190 0.98249 1.22066 0.89959 1.04422 0.91241 1.22848 1.00885 0.93573 1.01746 1.23191 1.02394 0.94569 1.01977 0.92990 0.95491 0.98570 0.94929 0.90323 0.85522 0.85942 0.76160 0.86044 0.86027 0.91148 0.88330 0.89949 0.90136 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.50 -13.79 8.70 -34.44 -0.30 -14.09 16 8 H 0.06 1.80 6.49 -52.48 -0.34 1.45 16 9 C 0.20 5.02 4.75 -4.98 -0.02 4.99 16 10 N -0.50 -10.66 4.56 -229.53 -1.05 -11.71 16 11 C 0.09 1.62 5.10 -4.98 -0.03 1.59 16 12 C -0.07 -1.02 3.90 -104.60 -0.41 -1.43 16 13 C -0.09 -1.24 9.69 -39.60 -0.38 -1.62 16 14 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 15 C 0.09 1.15 6.71 -39.22 -0.26 0.89 16 16 O -0.50 -5.64 13.50 -19.43 -0.26 -5.90 16 17 C -0.15 -1.91 9.97 -39.43 -0.39 -2.31 16 18 C -0.08 -1.14 6.14 -39.61 -0.24 -1.38 16 19 C 0.03 0.63 4.39 -67.72 -0.30 0.33 16 20 C -0.15 -2.87 9.69 -26.73 -0.26 -3.13 16 21 C -0.18 -3.05 7.14 -26.73 -0.19 -3.24 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.73 7.76 -51.93 -0.40 0.32 16 24 H 0.00 -0.10 8.01 -51.93 -0.42 -0.51 16 25 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 26 H 0.08 1.37 7.78 -51.93 -0.40 0.96 16 27 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.38 2.33 9.06 45.56 0.41 2.74 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.58 7.78 -52.48 -0.41 1.18 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 2.02 7.28 -51.93 -0.38 1.64 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.68 6.27 -51.93 -0.33 1.36 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -30.78 299.23 -8.71 -39.50 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.35 Total: 3.17 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -3.28 Total: -20.32 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.31 Total: -37.70 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.26 Total: -5.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.78 -8.71 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084221618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.155 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds