Wall clock time and date at job start Mon Mar 30 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99928 * 2 1 4 4 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47487 * 119.99529 * 3 2 1 6 6 H 1.48499 * 109.47385 * 239.99912 * 3 2 1 7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 181.11761 * 7 2 1 9 9 C 1.50703 * 120.00439 * 1.12143 * 7 2 1 10 10 H 1.08995 * 109.46923 * 26.83839 * 9 7 2 11 11 N 1.46897 * 109.47501 * 146.84156 * 9 7 2 12 12 C 1.46894 * 110.99955 * 275.00075 * 11 9 7 13 13 H 1.09002 * 110.45865 * 327.60391 * 12 11 9 14 14 C 1.54509 * 110.51257 * 204.99848 * 12 11 9 15 15 C 1.54476 * 104.06466 * 241.35784 * 14 12 11 16 16 O 1.44420 * 104.80346 * 23.97456 * 15 14 12 17 17 C 1.44426 * 105.27841 * 319.49043 * 16 15 14 18 18 C 1.50700 * 109.46697 * 266.84237 * 9 7 2 19 19 C 1.38236 * 120.00333 * 286.46960 * 18 9 7 20 20 C 1.38228 * 120.00390 * 179.78990 * 19 18 9 21 21 C 1.38244 * 119.99903 * 0.44396 * 20 19 18 22 22 C 1.38240 * 119.99604 * 359.81079 * 21 20 19 23 23 C 1.38231 * 119.99984 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99712 * 180.26562 * 1 2 3 25 25 H 1.00899 * 110.99784 * 151.04422 * 11 9 7 26 26 H 1.09005 * 110.50749 * 359.97438 * 14 12 11 27 27 H 1.08998 * 110.51398 * 122.71076 * 14 12 11 28 28 H 1.08998 * 110.37381 * 142.81083 * 15 14 12 29 29 H 1.09004 * 110.36999 * 265.14692 * 15 14 12 30 30 H 1.08999 * 110.37022 * 281.68332 * 17 16 15 31 31 H 1.09004 * 110.37304 * 159.34197 * 17 16 15 32 32 H 1.08001 * 119.99272 * 0.02562 * 19 18 9 33 33 H 1.07997 * 120.00697 * 180.27247 * 20 19 18 34 34 H 1.07997 * 120.00196 * 179.83358 * 21 20 19 35 35 H 1.08000 * 119.99517 * 180.02562 * 22 21 20 36 36 H 1.08006 * 119.99642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0188 9 6 1.2514 -2.4991 -0.0244 10 1 0.2836 -2.3509 -0.5035 11 7 2.0234 -3.4958 -0.7783 12 6 1.7580 -3.3876 -2.2190 13 1 0.7317 -3.0649 -2.3941 14 6 2.0288 -4.7364 -2.9222 15 6 3.1583 -4.4162 -3.9263 16 8 3.8183 -3.2532 -3.3807 17 6 2.7558 -2.4119 -2.8814 18 6 1.0441 -2.9864 1.3865 19 6 2.1061 -3.5095 2.1002 20 6 1.9169 -3.9525 3.3958 21 6 0.6636 -3.8808 3.9747 22 6 -0.3996 -3.3626 3.2592 23 6 -0.2094 -2.9155 1.9651 24 1 -0.4850 -0.8401 0.0039 25 1 1.8329 -4.4287 -0.4445 26 1 2.3601 -5.4834 -2.2009 27 1 1.1372 -5.0794 -3.4470 28 1 3.8551 -5.2517 -3.9928 29 1 2.7408 -4.1901 -4.9075 30 1 2.2767 -1.8785 -3.7024 31 1 3.1435 -1.7077 -2.1452 32 1 3.0845 -3.5685 1.6466 33 1 2.7476 -4.3571 3.9550 34 1 0.5152 -4.2294 4.9861 35 1 -1.3787 -3.3062 3.7116 36 1 -1.0400 -2.5102 1.4062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087786918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:50 Heat of formation + Delta-G solvation = -21.335962 kcal Electronic energy + Delta-G solvation = -18166.307942 eV Core-core repulsion = 15421.984215 eV Total energy + Delta-G solvation = -2744.323727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.08797 -38.37093 -35.29716 -32.74192 -30.99479 -30.14342 -29.52045 -27.42309 -25.60859 -22.93423 -22.20050 -21.75400 -20.20871 -20.05251 -17.02475 -16.23024 -15.77774 -15.60833 -14.82179 -14.75202 -14.34257 -13.77990 -13.56024 -13.31562 -12.98137 -12.59398 -12.21985 -12.08897 -11.73954 -11.30907 -11.11381 -11.02058 -10.83737 -10.62333 -10.46335 -10.21316 -10.17101 -9.90830 -9.27589 -9.08582 -8.51907 -8.18716 -7.80261 -7.43412 -6.41737 -4.14154 2.14004 2.17426 3.42019 3.43177 3.61077 4.44609 4.48824 4.55956 4.95931 5.01230 5.25293 5.33615 5.38950 5.55386 5.61506 5.73364 5.76699 5.90023 5.94763 6.05248 6.12321 6.23230 6.27227 6.31941 6.35414 6.65596 6.77873 6.85788 6.90597 7.18014 7.21727 7.30167 7.52656 7.73741 7.91207 7.96176 8.36138 8.54386 8.79613 9.54464 10.91619 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.009955 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.690058 B = 2811.903189 C = 4126.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.228 3.772 10 H 0.019 0.981 11 N -0.666 5.666 12 C 0.072 3.928 13 H 0.049 0.951 14 C -0.160 4.160 15 C 0.048 3.952 16 O -0.376 6.376 17 C 0.056 3.944 18 C -0.044 4.044 19 C -0.105 4.105 20 C -0.130 4.130 21 C -0.150 4.150 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.268 0.732 25 H 0.317 0.683 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 -8.373 -1.348 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.602 4.602 8 H 0.079 0.921 9 C 0.120 3.880 10 H 0.037 0.963 11 N -0.297 5.297 12 C -0.039 4.039 13 H 0.066 0.934 14 C -0.198 4.198 15 C -0.029 4.029 16 O -0.294 6.294 17 C -0.021 4.021 18 C -0.045 4.045 19 C -0.123 4.123 20 C -0.149 4.149 21 C -0.168 4.168 22 C -0.144 4.144 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.135 0.865 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.832 -6.275 -1.386 6.683 hybrid contribution -1.080 -1.990 0.135 2.268 sum 0.751 -8.265 -1.251 8.393 Atomic orbital electron populations 1.70852 1.06895 1.30516 1.45858 1.25863 0.96462 1.02684 0.93416 0.83586 0.74992 0.75298 0.76840 1.20858 1.21294 1.21166 1.21801 0.94701 0.89641 1.54028 0.92067 1.18569 0.92864 0.91002 0.85542 0.96311 1.60809 1.61228 1.06824 1.00873 1.22700 0.97598 0.93609 0.90008 0.93352 1.23224 0.98934 0.98519 0.99165 1.23239 0.94379 0.89702 0.95612 1.89110 1.30360 1.31514 1.78457 1.23681 0.87974 0.93510 0.96890 1.20742 0.91913 0.92332 0.99548 1.20962 0.99168 0.98502 0.93665 1.21042 0.96600 1.01463 0.95752 1.20857 0.93574 1.03132 0.99263 1.20959 0.98236 1.00213 0.94959 1.21030 0.97296 1.00502 0.95475 0.92032 0.86519 0.90453 0.91246 0.89968 0.93204 0.93648 0.86042 0.86047 0.87322 0.87499 0.87381 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.72 13.63 55.43 0.76 -24.96 16 2 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 3 Si 1.06 24.60 29.90 -169.99 -5.08 19.51 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.56 -14.70 6.77 -34.44 -0.23 -14.94 16 8 H 0.06 1.66 7.59 -52.49 -0.40 1.27 16 9 C 0.23 5.29 2.08 -70.02 -0.15 5.15 16 10 H 0.02 0.49 5.49 -51.93 -0.28 0.20 16 11 N -0.67 -13.55 5.71 -100.54 -0.57 -14.12 16 12 C 0.07 1.34 3.43 -66.15 -0.23 1.11 16 13 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 14 C -0.16 -2.36 6.76 -25.17 -0.17 -2.53 16 15 C 0.05 0.70 7.63 37.93 0.29 0.99 16 16 O -0.38 -7.09 11.65 -35.23 -0.41 -7.51 16 17 C 0.06 1.11 7.18 37.93 0.27 1.38 16 18 C -0.04 -0.97 4.64 -104.62 -0.49 -1.45 16 19 C -0.10 -2.12 9.09 -39.59 -0.36 -2.48 16 20 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 21 C -0.15 -2.58 10.05 -39.58 -0.40 -2.98 16 22 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 23 C -0.12 -2.62 9.58 -39.58 -0.38 -3.00 16 24 H 0.27 7.50 5.90 -40.82 -0.24 7.26 16 25 H 0.32 5.95 7.50 -39.29 -0.29 5.65 16 26 H 0.08 1.10 7.55 -51.93 -0.39 0.71 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 2.75 6.22 -51.93 -0.32 2.43 16 32 H 0.12 2.48 7.92 -52.49 -0.42 2.06 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.11 2.38 7.44 -52.48 -0.39 1.99 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -28.60 294.76 -8.48 -37.08 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.88 Total: 9.27 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.73 Total: -23.72 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.18 Total: -39.09 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.41 Total: -7.51 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.60 -8.48 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds