Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99928 * 2 1 4 4 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47487 * 119.99529 * 3 2 1 6 6 H 1.48499 * 109.47385 * 239.99912 * 3 2 1 7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 181.11761 * 7 2 1 9 9 C 1.50703 * 120.00439 * 1.12143 * 7 2 1 10 10 H 1.08995 * 109.46923 * 26.83839 * 9 7 2 11 11 N 1.46897 * 109.47501 * 146.84156 * 9 7 2 12 12 C 1.46894 * 110.99955 * 275.00075 * 11 9 7 13 13 H 1.09002 * 110.45865 * 327.60391 * 12 11 9 14 14 C 1.54509 * 110.51257 * 204.99848 * 12 11 9 15 15 C 1.54476 * 104.06466 * 241.35784 * 14 12 11 16 16 O 1.44420 * 104.80346 * 23.97456 * 15 14 12 17 17 C 1.44426 * 105.27841 * 319.49043 * 16 15 14 18 18 C 1.50700 * 109.46697 * 266.84237 * 9 7 2 19 19 C 1.38236 * 120.00333 * 286.46960 * 18 9 7 20 20 C 1.38228 * 120.00390 * 179.78990 * 19 18 9 21 21 C 1.38244 * 119.99903 * 0.44396 * 20 19 18 22 22 C 1.38240 * 119.99604 * 359.81079 * 21 20 19 23 23 C 1.38231 * 119.99984 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99712 * 180.26562 * 1 2 3 25 25 H 1.00899 * 110.99784 * 151.04422 * 11 9 7 26 26 H 1.09005 * 110.50749 * 359.97438 * 14 12 11 27 27 H 1.08998 * 110.51398 * 122.71076 * 14 12 11 28 28 H 1.08998 * 110.37381 * 142.81083 * 15 14 12 29 29 H 1.09004 * 110.36999 * 265.14692 * 15 14 12 30 30 H 1.08999 * 110.37022 * 281.68332 * 17 16 15 31 31 H 1.09004 * 110.37304 * 159.34197 * 17 16 15 32 32 H 1.08001 * 119.99272 * 0.02562 * 19 18 9 33 33 H 1.07997 * 120.00697 * 180.27247 * 20 19 18 34 34 H 1.07997 * 120.00196 * 179.83358 * 21 20 19 35 35 H 1.08000 * 119.99517 * 180.02562 * 22 21 20 36 36 H 1.08006 * 119.99642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0188 9 6 1.2514 -2.4991 -0.0244 10 1 0.2836 -2.3509 -0.5035 11 7 2.0234 -3.4958 -0.7783 12 6 1.7580 -3.3876 -2.2190 13 1 0.7317 -3.0649 -2.3941 14 6 2.0288 -4.7364 -2.9222 15 6 3.1583 -4.4162 -3.9263 16 8 3.8183 -3.2532 -3.3807 17 6 2.7558 -2.4119 -2.8814 18 6 1.0441 -2.9864 1.3865 19 6 2.1061 -3.5095 2.1002 20 6 1.9169 -3.9525 3.3958 21 6 0.6636 -3.8808 3.9747 22 6 -0.3996 -3.3626 3.2592 23 6 -0.2094 -2.9155 1.9651 24 1 -0.4850 -0.8401 0.0039 25 1 1.8329 -4.4287 -0.4445 26 1 2.3601 -5.4834 -2.2009 27 1 1.1372 -5.0794 -3.4470 28 1 3.8551 -5.2517 -3.9928 29 1 2.7408 -4.1901 -4.9075 30 1 2.2767 -1.8785 -3.7024 31 1 3.1435 -1.7077 -2.1452 32 1 3.0845 -3.5685 1.6466 33 1 2.7476 -4.3571 3.9550 34 1 0.5152 -4.2294 4.9861 35 1 -1.3787 -3.3062 3.7116 36 1 -1.0400 -2.5102 1.4062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087786918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -39.356818 kcal Electronic energy + Delta-G solvation = -18167.089385 eV Core-core repulsion = 15421.984215 eV Total energy + Delta-G solvation = -2745.105170 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59280 -39.85437 -36.96385 -34.57726 -32.59421 -31.65238 -30.90167 -28.94324 -27.51773 -24.71948 -23.54241 -23.23610 -21.84342 -21.56913 -18.91216 -17.74522 -17.25418 -17.02593 -16.47319 -16.20990 -15.82558 -15.66302 -15.09461 -14.88537 -14.62904 -14.09429 -13.72071 -13.64714 -13.36539 -13.03542 -12.66319 -12.53365 -12.37459 -12.10432 -11.96566 -11.88638 -11.74057 -11.61854 -10.97292 -10.69788 -10.53080 -9.69914 -9.39566 -9.20030 -8.50449 -6.25284 0.61683 0.65990 1.52015 1.58102 1.76658 2.54507 2.99541 3.12799 3.25737 3.42017 3.64979 4.02847 4.12921 4.20548 4.22556 4.31500 4.34440 4.42272 4.55801 4.64923 4.73939 4.81370 4.83066 4.87105 4.95255 5.03229 5.19842 5.26194 5.31005 5.68773 5.70631 5.83648 5.94099 6.00947 6.09499 6.28463 6.50035 6.59068 6.87401 7.49573 8.80472 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.009955 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.690058 B = 2811.903189 C = 4126.209488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.024 4.024 3 Si 1.102 2.898 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.044 0.956 9 C 0.236 3.764 10 H -0.012 1.012 11 N -0.665 5.665 12 C 0.065 3.935 13 H 0.031 0.969 14 C -0.148 4.148 15 C 0.044 3.956 16 O -0.396 6.396 17 C 0.060 3.940 18 C -0.069 4.069 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.147 4.147 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -10.088 -0.341 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.224 4.224 3 Si 0.925 3.075 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.062 0.938 9 C 0.128 3.872 10 H 0.005 0.995 11 N -0.297 5.297 12 C -0.046 4.046 13 H 0.049 0.951 14 C -0.186 4.186 15 C -0.033 4.033 16 O -0.315 6.315 17 C -0.017 4.017 18 C -0.071 4.071 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.143 4.143 23 C -0.166 4.166 24 H 0.070 0.930 25 H 0.145 0.855 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.538 -8.022 -0.387 8.423 hybrid contribution -1.277 -1.590 -0.153 2.045 sum 1.261 -9.613 -0.540 9.710 Atomic orbital electron populations 1.70932 1.07633 1.30019 1.48605 1.26940 0.96577 1.05628 0.93216 0.83106 0.74302 0.72339 0.77712 1.21155 1.20257 1.19718 1.21913 0.93847 0.91190 1.52953 0.93770 1.18302 0.91064 0.90940 0.86901 0.99464 1.60677 1.60486 1.06794 1.01718 1.22755 0.96321 0.96164 0.89356 0.95117 1.23179 1.00268 0.96020 0.99140 1.23539 0.94749 0.88914 0.96066 1.89075 1.30699 1.32878 1.78839 1.23440 0.88286 0.93552 0.96445 1.20622 0.93174 0.94498 0.98766 1.20983 0.98216 0.99368 0.95035 1.21428 0.98192 0.99981 0.94623 1.21335 0.92528 1.01096 1.00730 1.21295 1.00200 0.99126 0.93727 1.21058 0.96586 1.01890 0.97026 0.93027 0.85451 0.89632 0.88706 0.87345 0.91177 0.92932 0.89674 0.86811 0.83862 0.83321 0.84677 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.63 21.45 0.29 -55.05 16 2 C -0.02 -1.36 5.46 84.65 0.46 -0.89 16 3 Si 1.10 50.75 29.90 68.60 2.05 52.81 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.56 -30.48 6.77 25.60 0.17 -30.31 16 8 H 0.04 2.50 7.59 -2.91 -0.02 2.48 16 9 C 0.24 11.49 2.08 43.42 0.09 11.58 16 10 H -0.01 -0.66 5.49 -2.39 -0.01 -0.67 16 11 N -0.67 -27.78 5.71 -471.99 -2.70 -30.48 16 12 C 0.06 2.46 3.43 45.93 0.16 2.62 16 13 H 0.03 1.28 7.44 -2.39 -0.02 1.26 16 14 C -0.15 -4.09 6.76 31.61 0.21 -3.87 16 15 C 0.04 1.17 7.63 72.48 0.55 1.72 16 16 O -0.40 -14.69 11.65 -148.98 -1.74 -16.43 16 17 C 0.06 2.42 7.18 72.49 0.52 2.94 16 18 C -0.07 -3.12 4.64 -19.87 -0.09 -3.21 16 19 C -0.12 -4.70 9.09 22.27 0.20 -4.50 16 20 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 21 C -0.14 -4.26 10.05 22.27 0.22 -4.03 16 22 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 23 C -0.15 -6.28 9.58 22.27 0.21 -6.07 16 24 H 0.26 15.37 5.90 -92.71 -0.55 14.82 16 25 H 0.33 12.37 7.50 -89.69 -0.67 11.70 16 26 H 0.09 2.24 7.55 -2.38 -0.02 2.22 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 4.05 6.22 -2.39 -0.01 4.03 16 32 H 0.11 4.64 7.92 -2.91 -0.02 4.62 16 33 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.09 4.20 7.44 -2.91 -0.02 4.18 16 Total: -1.00 -64.38 294.76 1.70 -62.68 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.62 Total: 28.48 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.17 Total: -42.01 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.40 Total: -85.53 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.74 Total: -16.43 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.81 kcal Total: -64.38 1.70 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.324 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds