Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00208 * 2 1 4 4 H 1.48498 * 109.46886 * 94.22069 * 3 2 1 5 5 H 1.48489 * 109.47321 * 214.22319 * 3 2 1 6 6 H 1.48500 * 109.46549 * 334.22357 * 3 2 1 7 7 C 1.37877 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00397 * 6.08644 * 7 2 1 9 9 C 1.50709 * 119.99726 * 186.09163 * 7 2 1 10 10 H 1.08992 * 109.47147 * 4.80001 * 9 7 2 11 11 N 1.46901 * 109.47076 * 124.80014 * 9 7 2 12 12 C 1.46899 * 110.99791 * 274.99905 * 11 9 7 13 13 H 1.09001 * 110.45585 * 34.29965 * 12 11 9 14 14 C 1.54511 * 110.51296 * 156.90293 * 12 11 9 15 15 C 1.54481 * 104.06341 * 118.64075 * 14 12 11 16 16 O 1.44430 * 104.79932 * 23.98284 * 15 14 12 17 17 C 1.44647 * 105.36981 * 319.56262 * 16 15 14 18 18 C 1.50703 * 109.46772 * 244.79656 * 9 7 2 19 19 C 1.38236 * 120.00084 * 285.75732 * 18 9 7 20 20 C 1.38234 * 119.99978 * 179.77238 * 19 18 9 21 21 C 1.38238 * 119.99772 * 0.49632 * 20 19 18 22 22 C 1.38242 * 120.00128 * 359.75947 * 21 20 19 23 23 C 1.38232 * 119.99654 * 106.03176 * 18 9 7 24 24 H 0.96998 * 120.00079 * 0.02562 * 1 2 3 25 25 H 1.00899 * 110.99801 * 151.04323 * 11 9 7 26 26 H 1.08989 * 110.51476 * 237.29023 * 14 12 11 27 27 H 1.09007 * 110.50659 * 0.02562 * 14 12 11 28 28 H 1.08997 * 110.37463 * 142.81257 * 15 14 12 29 29 H 1.09003 * 110.37525 * 265.03955 * 15 14 12 30 30 H 1.09003 * 110.33743 * 281.59226 * 17 16 15 31 31 H 1.08991 * 110.50470 * 159.18954 * 17 16 15 32 32 H 1.07999 * 120.00006 * 359.97438 * 19 18 9 33 33 H 1.07996 * 120.00536 * 180.23428 * 20 19 18 34 34 H 1.08001 * 120.00040 * 179.72891 * 21 20 19 35 35 H 1.07998 * 119.99889 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.00514 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5859 1.9948 1.3963 5 1 3.4992 1.4676 -0.7874 6 1 1.4048 2.6767 -0.6089 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 -0.1001 9 6 3.5052 -1.1978 0.1380 10 1 3.8565 -0.1808 0.3116 11 7 3.8902 -2.0491 1.2715 12 6 3.8386 -1.2998 2.5340 13 1 3.0273 -0.5722 2.5122 14 6 3.6690 -2.2641 3.7293 15 6 4.9376 -2.0337 4.5803 16 8 5.3787 -0.7032 4.2323 17 6 5.1882 -0.5979 2.8023 18 6 4.1250 -1.7344 -1.1266 19 6 4.0706 -3.0879 -1.4026 20 6 4.6350 -3.5794 -2.5648 21 6 5.2627 -2.7190 -3.4460 22 6 5.3217 -1.3662 -3.1674 23 6 4.7528 -0.8740 -2.0076 24 1 -0.4850 0.8400 -0.0004 25 1 4.8039 -2.4520 1.1272 26 1 2.7753 -2.0116 4.2999 27 1 3.6239 -3.2968 3.3835 28 1 4.6973 -2.0883 5.6421 29 1 5.7028 -2.7674 4.3270 30 1 5.9934 -1.1089 2.2743 31 1 5.1388 0.4480 2.4997 32 1 3.5843 -3.7607 -0.7118 33 1 4.5892 -4.6363 -2.7823 34 1 5.7075 -3.1036 -4.3519 35 1 5.8125 -0.6940 -3.8556 36 1 4.7988 0.1829 -1.7901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087786922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = -17.564412 kcal Electronic energy + Delta-G solvation = -18128.740645 eV Core-core repulsion = 15384.580465 eV Total energy + Delta-G solvation = -2744.160181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27060 -38.50943 -35.35620 -32.54490 -31.39390 -30.28146 -29.63964 -27.75378 -26.16739 -22.95762 -22.30743 -21.94887 -20.17541 -19.88221 -17.02181 -16.56982 -15.92755 -15.74599 -15.09045 -14.68868 -14.41941 -14.25791 -13.47411 -13.27854 -12.83350 -12.80790 -12.57391 -12.32453 -11.96689 -11.66281 -11.37451 -11.10254 -11.02391 -10.76015 -10.46526 -10.25087 -10.14302 -9.88685 -9.65715 -9.55321 -8.70356 -8.30523 -7.97662 -7.45857 -6.20513 -4.17755 2.01200 2.05084 3.15729 3.22346 3.26521 4.18772 4.26738 4.43567 4.91934 5.10635 5.15869 5.21568 5.37447 5.46192 5.48150 5.51593 5.62388 5.69488 5.90838 5.92434 6.01884 6.17427 6.18494 6.20214 6.37181 6.48933 6.54782 6.64914 6.73326 7.00016 7.06346 7.10176 7.37736 7.43535 7.67829 7.86090 8.19233 8.55089 8.93047 9.41253 10.92047 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.009924 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.234494 B = 2820.672092 C = 3810.870134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.864 3.136 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.286 1.286 7 C -0.481 4.481 8 H 0.082 0.918 9 C 0.214 3.786 10 H 0.018 0.982 11 N -0.664 5.664 12 C 0.066 3.934 13 H 0.097 0.903 14 C -0.143 4.143 15 C 0.042 3.958 16 O -0.382 6.382 17 C 0.014 3.986 18 C -0.045 4.045 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.266 0.734 25 H 0.316 0.684 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -3.635 1.328 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.108 3.892 10 H 0.036 0.964 11 N -0.295 5.295 12 C -0.046 4.046 13 H 0.116 0.884 14 C -0.181 4.181 15 C -0.035 4.035 16 O -0.300 6.300 17 C -0.065 4.065 18 C -0.047 4.047 19 C -0.120 4.120 20 C -0.145 4.145 21 C -0.165 4.165 22 C -0.142 4.142 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.856 -3.612 1.551 10.611 hybrid contribution 0.960 1.452 -0.418 1.791 sum 10.817 -2.159 1.133 11.088 Atomic orbital electron populations 1.69879 1.06138 1.27092 1.49346 1.25077 0.94758 0.98660 0.94477 0.87094 0.80480 0.84385 0.78891 1.19986 1.18865 1.21165 1.20804 0.87702 0.94821 1.48643 0.90003 1.18733 0.96416 0.90242 0.83855 0.96440 1.61052 1.31194 1.35803 1.01406 1.22814 0.96172 0.94984 0.90624 0.88442 1.22926 0.97662 1.01515 0.96047 1.23444 0.95483 0.84723 0.99822 1.89091 1.86171 1.32100 1.22640 1.24395 0.97953 1.02064 0.82078 1.20540 0.92466 0.93336 0.98327 1.21005 0.98744 0.95520 0.96772 1.21080 0.99298 0.98993 0.95101 1.20899 1.02183 0.93779 0.99604 1.20960 1.00759 0.95357 0.97171 1.21102 0.99315 0.99489 0.95242 0.92406 0.86649 0.90778 0.89503 0.89675 0.92787 0.92628 0.89760 0.85660 0.87059 0.87300 0.87215 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.86 20.56 26.94 -169.99 -4.58 15.98 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.26 -5.92 5.62 56.52 0.32 -5.60 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.48 -12.82 8.79 -34.44 -0.30 -13.13 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.21 4.72 2.00 -70.01 -0.14 4.58 16 10 H 0.02 0.40 4.29 -51.93 -0.22 0.18 16 11 N -0.66 -12.77 5.57 -100.53 -0.56 -13.33 16 12 C 0.07 1.20 3.19 -66.15 -0.21 0.99 16 13 H 0.10 2.10 7.71 -51.93 -0.40 1.70 16 14 C -0.14 -2.22 6.88 -25.16 -0.17 -2.40 16 15 C 0.04 0.58 7.64 37.93 0.29 0.87 16 16 O -0.38 -6.44 11.65 -35.23 -0.41 -6.85 16 17 C 0.01 0.23 7.25 37.93 0.28 0.51 16 18 C -0.05 -0.93 4.65 -104.62 -0.49 -1.42 16 19 C -0.10 -1.92 9.08 -39.58 -0.36 -2.28 16 20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 21 C -0.15 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 23 C -0.13 -2.57 9.67 -39.58 -0.38 -2.95 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.32 5.44 7.54 -39.29 -0.30 5.15 16 26 H 0.07 1.15 8.14 -51.94 -0.42 0.72 16 27 H 0.09 1.30 7.97 -51.92 -0.41 0.89 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.86 7.58 -51.93 -0.39 0.46 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.13 2.35 7.90 -52.49 -0.41 1.94 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 2.16 6.81 -52.48 -0.36 1.81 16 LS Contribution 295.59 15.07 4.45 4.45 Total: -1.00 -28.97 295.59 -8.20 -37.17 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.10 Total: 8.90 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.78 Total: -20.91 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.21 Total: -38.75 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.41 Total: -6.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.58 Total: 15.98 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.97 -8.20 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.610 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds