Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00208 * 2 1 4 4 H 1.48498 * 109.46886 * 94.22069 * 3 2 1 5 5 H 1.48489 * 109.47321 * 214.22319 * 3 2 1 6 6 H 1.48500 * 109.46549 * 334.22357 * 3 2 1 7 7 C 1.37877 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00397 * 6.08644 * 7 2 1 9 9 C 1.50709 * 119.99726 * 186.09163 * 7 2 1 10 10 H 1.08992 * 109.47147 * 4.80001 * 9 7 2 11 11 N 1.46901 * 109.47076 * 124.80014 * 9 7 2 12 12 C 1.46899 * 110.99791 * 274.99905 * 11 9 7 13 13 H 1.09001 * 110.45585 * 34.29965 * 12 11 9 14 14 C 1.54511 * 110.51296 * 156.90293 * 12 11 9 15 15 C 1.54481 * 104.06341 * 118.64075 * 14 12 11 16 16 O 1.44430 * 104.79932 * 23.98284 * 15 14 12 17 17 C 1.44647 * 105.36981 * 319.56262 * 16 15 14 18 18 C 1.50703 * 109.46772 * 244.79656 * 9 7 2 19 19 C 1.38236 * 120.00084 * 285.75732 * 18 9 7 20 20 C 1.38234 * 119.99978 * 179.77238 * 19 18 9 21 21 C 1.38238 * 119.99772 * 0.49632 * 20 19 18 22 22 C 1.38242 * 120.00128 * 359.75947 * 21 20 19 23 23 C 1.38232 * 119.99654 * 106.03176 * 18 9 7 24 24 H 0.96998 * 120.00079 * 0.02562 * 1 2 3 25 25 H 1.00899 * 110.99801 * 151.04323 * 11 9 7 26 26 H 1.08989 * 110.51476 * 237.29023 * 14 12 11 27 27 H 1.09007 * 110.50659 * 0.02562 * 14 12 11 28 28 H 1.08997 * 110.37463 * 142.81257 * 15 14 12 29 29 H 1.09003 * 110.37525 * 265.03955 * 15 14 12 30 30 H 1.09003 * 110.33743 * 281.59226 * 17 16 15 31 31 H 1.08991 * 110.50470 * 159.18954 * 17 16 15 32 32 H 1.07999 * 120.00006 * 359.97438 * 19 18 9 33 33 H 1.07996 * 120.00536 * 180.23428 * 20 19 18 34 34 H 1.08001 * 120.00040 * 179.72891 * 21 20 19 35 35 H 1.07998 * 119.99889 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.00514 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5859 1.9948 1.3963 5 1 3.4992 1.4676 -0.7874 6 1 1.4048 2.6767 -0.6089 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 -0.1001 9 6 3.5052 -1.1978 0.1380 10 1 3.8565 -0.1808 0.3116 11 7 3.8902 -2.0491 1.2715 12 6 3.8386 -1.2998 2.5340 13 1 3.0273 -0.5722 2.5122 14 6 3.6690 -2.2641 3.7293 15 6 4.9376 -2.0337 4.5803 16 8 5.3787 -0.7032 4.2323 17 6 5.1882 -0.5979 2.8023 18 6 4.1250 -1.7344 -1.1266 19 6 4.0706 -3.0879 -1.4026 20 6 4.6350 -3.5794 -2.5648 21 6 5.2627 -2.7190 -3.4460 22 6 5.3217 -1.3662 -3.1674 23 6 4.7528 -0.8740 -2.0076 24 1 -0.4850 0.8400 -0.0004 25 1 4.8039 -2.4520 1.1272 26 1 2.7753 -2.0116 4.2999 27 1 3.6239 -3.2968 3.3835 28 1 4.6973 -2.0883 5.6421 29 1 5.7028 -2.7674 4.3270 30 1 5.9934 -1.1089 2.2743 31 1 5.1388 0.4480 2.4997 32 1 3.5843 -3.7607 -0.7118 33 1 4.5892 -4.6363 -2.7823 34 1 5.7075 -3.1036 -4.3519 35 1 5.8125 -0.6940 -3.8556 36 1 4.7988 0.1829 -1.7901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087786922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = -36.881226 kcal Electronic energy + Delta-G solvation = -18129.578285 eV Core-core repulsion = 15384.580465 eV Total energy + Delta-G solvation = -2744.997821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65879 -39.86720 -36.91253 -34.48139 -32.92749 -31.64184 -30.93629 -29.24979 -27.94093 -24.50622 -23.64449 -23.31566 -21.57032 -21.50224 -19.04805 -17.94396 -17.31903 -17.07513 -16.43790 -16.38124 -15.85095 -15.80509 -14.94728 -14.78023 -14.58811 -14.22602 -14.04970 -13.78794 -13.43292 -13.09891 -12.95400 -12.74582 -12.49594 -12.18853 -12.01055 -11.74652 -11.67807 -11.63268 -11.49574 -10.82412 -10.75413 -9.66847 -9.41608 -9.06626 -8.33114 -6.33838 0.63211 0.67521 1.24720 1.26779 1.35004 2.25808 2.83837 3.00574 3.14813 3.54606 3.78309 3.89518 4.09915 4.16024 4.24144 4.25267 4.33960 4.40743 4.43885 4.60846 4.67927 4.80395 4.84437 4.90122 4.92535 5.08969 5.20106 5.23965 5.33777 5.49226 5.71486 5.74374 5.74982 5.93653 6.09007 6.28588 6.45874 6.68714 6.88569 7.29679 8.83722 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.009924 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.234494 B = 2820.672092 C = 3810.870134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.241 1.241 6 H -0.288 1.288 7 C -0.477 4.477 8 H 0.034 0.966 9 C 0.224 3.776 10 H 0.013 0.987 11 N -0.664 5.664 12 C 0.059 3.941 13 H 0.057 0.943 14 C -0.140 4.140 15 C 0.046 3.954 16 O -0.396 6.396 17 C 0.022 3.978 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.151 4.151 24 H 0.265 0.735 25 H 0.332 0.668 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.662 -4.200 0.475 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.180 4.180 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.214 1.214 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.116 3.884 10 H 0.030 0.970 11 N -0.296 5.296 12 C -0.052 4.052 13 H 0.076 0.924 14 C -0.178 4.178 15 C -0.030 4.030 16 O -0.315 6.315 17 C -0.057 4.057 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.962 -4.197 0.706 13.643 hybrid contribution 0.041 1.454 -0.187 1.466 sum 13.003 -2.743 0.518 13.299 Atomic orbital electron populations 1.70033 1.07978 1.27835 1.52335 1.25823 0.95378 1.02280 0.94562 0.86157 0.79961 0.79879 0.79402 1.19391 1.16466 1.21391 1.20945 0.90416 0.92785 1.47442 0.94734 1.18454 0.93455 0.90680 0.85803 0.96973 1.60786 1.32346 1.35523 1.00954 1.22798 0.96104 0.95117 0.91219 0.92447 1.22894 0.98812 1.00993 0.95119 1.23612 0.94765 0.83885 1.00758 1.89078 1.86263 1.33828 1.22306 1.24259 0.97155 1.01695 0.82589 1.20412 0.94696 0.94487 0.97889 1.21029 0.99578 0.94816 0.98054 1.21431 0.98010 1.00833 0.93914 1.21377 1.00520 0.93190 1.00310 1.21330 0.99750 0.96547 0.96412 1.21213 1.00287 0.99159 0.96313 0.92585 0.84879 0.91283 0.88922 0.87329 0.90575 0.90794 0.90372 0.86745 0.84077 0.83392 0.84125 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.92 43.54 26.94 68.60 1.85 45.39 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.24 -10.38 5.62 99.48 0.56 -9.82 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.48 -26.66 8.79 25.60 0.22 -26.44 16 8 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 9 C 0.22 10.03 2.00 43.43 0.09 10.11 16 10 H 0.01 0.57 4.29 -2.39 -0.01 0.56 16 11 N -0.66 -25.78 5.57 -471.97 -2.63 -28.42 16 12 C 0.06 2.18 3.19 45.93 0.15 2.33 16 13 H 0.06 2.58 7.71 -2.39 -0.02 2.56 16 14 C -0.14 -4.25 6.88 31.61 0.22 -4.03 16 15 C 0.05 1.16 7.64 72.49 0.55 1.71 16 16 O -0.40 -12.60 11.65 -148.98 -1.74 -14.34 16 17 C 0.02 0.70 7.25 72.48 0.53 1.23 16 18 C -0.07 -2.99 4.65 -19.87 -0.09 -3.08 16 19 C -0.12 -4.28 9.08 22.27 0.20 -4.07 16 20 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 21 C -0.14 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 23 C -0.15 -5.58 9.67 22.27 0.22 -5.36 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.33 11.18 7.54 -89.70 -0.68 10.51 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 2.69 7.97 -2.38 -0.02 2.67 16 28 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.11 4.35 7.90 -2.91 -0.02 4.33 16 33 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.11 3.96 6.81 -2.91 -0.02 3.94 16 Total: -1.00 -66.06 295.59 1.24 -64.82 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.25 Total: 27.21 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.21 Total: -36.45 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.33 Total: -86.63 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.74 Total: -14.34 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.85 Total: 45.39 kcal Total: -66.06 1.24 -64.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.935 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds