Wall clock time and date at job start Mon Mar 30 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00319 * 2 1 4 4 H 1.48500 * 109.46861 * 270.00146 * 3 2 1 5 5 H 1.48503 * 109.47121 * 29.99676 * 3 2 1 6 6 H 1.48501 * 109.47338 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 170.54288 * 7 2 1 9 9 C 1.50702 * 120.00207 * 350.54594 * 7 2 1 10 10 H 1.09000 * 109.46874 * 174.59973 * 9 7 2 11 11 N 1.46901 * 109.46909 * 54.59960 * 9 7 2 12 12 C 1.46898 * 111.00092 * 85.00535 * 11 9 7 13 13 H 1.09001 * 110.75554 * 34.28967 * 12 11 9 14 14 C 1.55305 * 110.85249 * 157.77127 * 12 11 9 15 15 C 1.55202 * 100.82824 * 152.17769 * 14 12 11 16 16 O 1.43647 * 105.26028 * 323.81210 * 15 14 12 17 17 C 1.43244 * 109.96964 * 24.28769 * 16 15 14 18 18 C 1.50697 * 109.46876 * 294.59919 * 9 7 2 19 19 C 1.38242 * 119.99976 * 91.27699 * 18 9 7 20 20 C 1.38232 * 120.00188 * 180.02562 * 19 18 9 21 21 C 1.38241 * 119.99542 * 359.94771 * 20 19 18 22 22 C 1.38230 * 120.00328 * 0.28170 * 21 20 19 23 23 C 1.38236 * 120.00111 * 271.24682 * 18 9 7 24 24 H 0.97000 * 119.99749 * 359.97438 * 1 2 3 25 25 H 1.00906 * 110.99673 * 208.95198 * 11 9 7 26 26 H 1.09006 * 111.11907 * 270.24331 * 14 12 11 27 27 H 1.08999 * 111.12427 * 34.39270 * 14 12 11 28 28 H 1.09001 * 110.36842 * 204.80045 * 15 14 12 29 29 H 1.08996 * 110.21292 * 82.75159 * 15 14 12 30 30 H 1.08999 * 109.83163 * 238.77059 * 17 16 15 31 31 H 1.09004 * 109.90357 * 117.84267 * 17 16 15 32 32 H 1.08002 * 119.99575 * 359.96604 * 19 18 9 33 33 H 1.07999 * 120.00369 * 179.97438 * 20 19 18 34 34 H 1.08007 * 119.99271 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.00140 * 179.72646 * 22 21 20 36 36 H 1.07999 * 119.99910 * 0.02562 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0735 -1.2006 -0.1531 9 6 1.2663 -2.4903 0.2155 10 1 1.9546 -3.3258 0.0881 11 7 0.1758 -2.6006 -0.7625 12 6 0.6609 -3.1604 -2.0311 13 1 1.4487 -3.8926 -1.8540 14 6 -0.5062 -3.7890 -2.8402 15 6 0.0221 -3.6239 -4.2902 16 8 0.7182 -2.3674 -4.2981 17 6 1.1533 -2.0407 -2.9730 18 6 0.6953 -2.5178 1.6098 19 6 -0.5838 -2.0478 1.8424 20 6 -1.1074 -2.0726 3.1215 21 6 -0.3522 -2.5684 4.1679 22 6 0.9286 -3.0339 3.9362 23 6 1.4504 -3.0136 2.6562 24 1 -0.4850 0.8401 0.0004 25 1 -0.5867 -3.1489 -0.3935 26 1 -0.6398 -4.8402 -2.5846 27 1 -1.4308 -3.2306 -2.6942 28 1 -0.8081 -3.6009 -4.9961 29 1 0.7054 -4.4365 -4.5369 30 1 0.7250 -1.0859 -2.6680 31 1 2.2414 -1.9842 -2.9431 32 1 -1.1736 -1.6604 1.0248 33 1 -2.1065 -1.7051 3.3032 34 1 -0.7615 -2.5881 5.1672 35 1 1.5201 -3.4171 4.7544 36 1 2.4496 -3.3808 2.4746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087786924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:59 Heat of formation + Delta-G solvation = -8.064602 kcal Electronic energy + Delta-G solvation = -18358.383874 eV Core-core repulsion = 15614.635636 eV Total energy + Delta-G solvation = -2743.748238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.85108 -38.15956 -35.08646 -32.33884 -30.84040 -29.91069 -29.30315 -27.29456 -26.01084 -22.63328 -21.81497 -21.56215 -20.05274 -19.79312 -16.54316 -16.08682 -15.71926 -15.32484 -14.77090 -14.22660 -14.12020 -13.83974 -13.41266 -13.02834 -12.67051 -12.46350 -12.26002 -11.94661 -11.67054 -11.15118 -10.95407 -10.90259 -10.78326 -10.49580 -10.41250 -10.20230 -9.92929 -9.66791 -9.31564 -8.80928 -8.46100 -7.93107 -7.55164 -6.99160 -5.87137 -4.04505 2.36634 2.45539 3.32196 3.39636 3.43229 4.45053 4.51741 4.84238 5.09152 5.14340 5.36374 5.53613 5.60970 5.72253 5.83193 5.91931 5.93458 6.02890 6.07279 6.26534 6.31431 6.49868 6.53924 6.66652 6.71223 6.83633 6.99181 7.12061 7.18618 7.38295 7.54217 7.66130 7.82788 7.86450 8.07488 8.17652 8.37705 8.73954 9.03419 9.61739 11.07455 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.009539 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.488785 B = 2934.601281 C = 3955.379064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.093 3.907 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.249 3.751 10 H 0.001 0.999 11 N -0.629 5.629 12 C 0.073 3.927 13 H 0.037 0.963 14 C -0.160 4.160 15 C 0.056 3.944 16 O -0.399 6.399 17 C 0.069 3.931 18 C -0.040 4.040 19 C -0.080 4.080 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.131 4.131 24 H 0.254 0.746 25 H 0.311 0.689 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -6.805 -0.043 7.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.115 4.115 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.072 0.928 9 C 0.142 3.858 10 H 0.019 0.981 11 N -0.261 5.261 12 C -0.039 4.039 13 H 0.054 0.946 14 C -0.198 4.198 15 C -0.021 4.021 16 O -0.318 6.318 17 C -0.008 4.008 18 C -0.041 4.041 19 C -0.098 4.098 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.157 4.157 23 C -0.150 4.150 24 H 0.064 0.936 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.252 -5.896 -0.434 6.327 hybrid contribution 0.722 0.081 0.708 1.014 sum -1.531 -5.815 0.274 6.020 Atomic orbital electron populations 1.70049 1.05477 1.25318 1.44962 1.24814 0.94548 0.98131 0.94030 0.86924 0.80362 0.84552 0.78116 1.20648 1.21267 1.20105 1.20763 0.93105 0.90072 1.52096 0.92821 1.18252 0.87820 0.95341 0.84413 0.98121 1.60893 1.10061 1.52601 1.02507 1.22839 0.94330 0.93700 0.92983 0.94562 1.23472 1.00271 1.00765 0.95331 1.23173 0.95229 0.87079 0.96637 1.88350 1.75274 1.37744 1.30468 1.23233 0.98342 1.00144 0.79038 1.20517 0.92956 0.93377 0.97287 1.21541 0.96021 0.95463 0.96789 1.21137 0.99287 1.01448 0.94048 1.20816 0.95357 1.02898 0.97993 1.20810 0.95899 1.02627 0.96379 1.20887 0.99286 1.01931 0.92873 0.93566 0.87065 0.91176 0.89705 0.90799 0.93327 0.88545 0.92477 0.83024 0.87857 0.88116 0.87928 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.18 9.54 55.43 0.53 -20.65 16 2 C 0.09 2.39 5.21 -17.82 -0.09 2.30 16 3 Si 0.87 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.33 8.00 -34.44 -0.28 -13.60 16 8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 9 C 0.25 5.70 2.47 -70.02 -0.17 5.53 16 10 H 0.00 0.03 7.42 -51.93 -0.39 -0.36 16 11 N -0.63 -13.30 4.14 -100.14 -0.41 -13.72 16 12 C 0.07 1.39 3.28 -65.77 -0.22 1.18 16 13 H 0.04 0.70 7.49 -51.93 -0.39 0.31 16 14 C -0.16 -2.52 6.60 -24.34 -0.16 -2.68 16 15 C 0.06 0.87 7.78 38.32 0.30 1.16 16 16 O -0.40 -7.84 11.36 -35.23 -0.40 -8.24 16 17 C 0.07 1.44 6.75 37.88 0.26 1.70 16 18 C -0.04 -0.89 4.65 -104.62 -0.49 -1.37 16 19 C -0.08 -1.72 7.62 -39.58 -0.30 -2.02 16 20 C -0.14 -2.74 10.05 -39.58 -0.40 -3.13 16 21 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.14 -2.57 10.05 -39.58 -0.40 -2.96 16 23 C -0.13 -2.68 9.71 -39.58 -0.38 -3.07 16 24 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.31 6.23 7.21 -39.29 -0.28 5.95 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 2.33 8.02 -51.93 -0.42 1.91 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.15 3.49 5.77 -52.49 -0.30 3.18 16 33 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 293.12 15.07 4.42 4.42 Total: -1.00 -26.42 293.12 -8.75 -35.16 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.13 Total: 7.56 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.73 Total: -20.15 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.11 Total: -34.36 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.40 Total: -8.24 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.42 -8.75 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.099 kcal (2) G-P(sol) polarization free energy of solvation -26.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds