Wall clock time and date at job start Mon Mar 30 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00319 * 2 1 4 4 H 1.48500 * 109.46861 * 270.00146 * 3 2 1 5 5 H 1.48503 * 109.47121 * 29.99676 * 3 2 1 6 6 H 1.48501 * 109.47338 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 170.54288 * 7 2 1 9 9 C 1.50702 * 120.00207 * 350.54594 * 7 2 1 10 10 H 1.09000 * 109.46874 * 174.59973 * 9 7 2 11 11 N 1.46901 * 109.46909 * 54.59960 * 9 7 2 12 12 C 1.46898 * 111.00092 * 85.00535 * 11 9 7 13 13 H 1.09001 * 110.75554 * 34.28967 * 12 11 9 14 14 C 1.55305 * 110.85249 * 157.77127 * 12 11 9 15 15 C 1.55202 * 100.82824 * 152.17769 * 14 12 11 16 16 O 1.43647 * 105.26028 * 323.81210 * 15 14 12 17 17 C 1.43244 * 109.96964 * 24.28769 * 16 15 14 18 18 C 1.50697 * 109.46876 * 294.59919 * 9 7 2 19 19 C 1.38242 * 119.99976 * 91.27699 * 18 9 7 20 20 C 1.38232 * 120.00188 * 180.02562 * 19 18 9 21 21 C 1.38241 * 119.99542 * 359.94771 * 20 19 18 22 22 C 1.38230 * 120.00328 * 0.28170 * 21 20 19 23 23 C 1.38236 * 120.00111 * 271.24682 * 18 9 7 24 24 H 0.97000 * 119.99749 * 359.97438 * 1 2 3 25 25 H 1.00906 * 110.99673 * 208.95198 * 11 9 7 26 26 H 1.09006 * 111.11907 * 270.24331 * 14 12 11 27 27 H 1.08999 * 111.12427 * 34.39270 * 14 12 11 28 28 H 1.09001 * 110.36842 * 204.80045 * 15 14 12 29 29 H 1.08996 * 110.21292 * 82.75159 * 15 14 12 30 30 H 1.08999 * 109.83163 * 238.77059 * 17 16 15 31 31 H 1.09004 * 109.90357 * 117.84267 * 17 16 15 32 32 H 1.08002 * 119.99575 * 359.96604 * 19 18 9 33 33 H 1.07999 * 120.00369 * 179.97438 * 20 19 18 34 34 H 1.08007 * 119.99271 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.00140 * 179.72646 * 22 21 20 36 36 H 1.07999 * 119.99910 * 0.02562 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0735 -1.2006 -0.1531 9 6 1.2663 -2.4903 0.2155 10 1 1.9546 -3.3258 0.0881 11 7 0.1758 -2.6006 -0.7625 12 6 0.6609 -3.1604 -2.0311 13 1 1.4487 -3.8926 -1.8540 14 6 -0.5062 -3.7890 -2.8402 15 6 0.0221 -3.6239 -4.2902 16 8 0.7182 -2.3674 -4.2981 17 6 1.1533 -2.0407 -2.9730 18 6 0.6953 -2.5178 1.6098 19 6 -0.5838 -2.0478 1.8424 20 6 -1.1074 -2.0726 3.1215 21 6 -0.3522 -2.5684 4.1679 22 6 0.9286 -3.0339 3.9362 23 6 1.4504 -3.0136 2.6562 24 1 -0.4850 0.8401 0.0004 25 1 -0.5867 -3.1489 -0.3935 26 1 -0.6398 -4.8402 -2.5846 27 1 -1.4308 -3.2306 -2.6942 28 1 -0.8081 -3.6009 -4.9961 29 1 0.7054 -4.4365 -4.5369 30 1 0.7250 -1.0859 -2.6680 31 1 2.2414 -1.9842 -2.9431 32 1 -1.1736 -1.6604 1.0248 33 1 -2.1065 -1.7051 3.3032 34 1 -0.7615 -2.5881 5.1672 35 1 1.5201 -3.4171 4.7544 36 1 2.4496 -3.3808 2.4746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087786924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:59 Heat of formation + Delta-G solvation = -22.811953 kcal Electronic energy + Delta-G solvation = -18359.023367 eV Core-core repulsion = 15614.635636 eV Total energy + Delta-G solvation = -2744.387731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38640 -39.68289 -36.73929 -34.13143 -32.48258 -31.43431 -30.73915 -28.89102 -27.84694 -24.37466 -23.19358 -23.07027 -21.59899 -21.44270 -18.31533 -17.56736 -17.36614 -16.84388 -16.60699 -15.77218 -15.69878 -15.39670 -15.00353 -14.66249 -14.28491 -13.96963 -13.78600 -13.64853 -13.27588 -12.83016 -12.74020 -12.49782 -12.33685 -12.15789 -11.99546 -11.77973 -11.48048 -11.36508 -11.09831 -10.45176 -10.31910 -9.46876 -9.15459 -8.68870 -7.80801 -6.03266 0.81793 0.92717 1.39963 1.44777 1.49575 2.49781 3.05509 3.25535 3.37148 3.69875 3.72827 4.16722 4.28503 4.34307 4.37089 4.43735 4.51047 4.60724 4.68726 4.86254 4.88598 4.96658 5.03022 5.08976 5.18847 5.21024 5.39618 5.46563 5.59767 5.81157 5.86427 5.99259 6.17259 6.21199 6.32998 6.52744 6.60740 7.00369 7.22907 7.63465 9.09038 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.009539 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.488785 B = 2934.601281 C = 3955.379064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.065 3.935 3 Si 0.912 3.088 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.035 0.965 9 C 0.252 3.748 10 H -0.009 1.009 11 N -0.635 5.635 12 C 0.069 3.931 13 H 0.037 0.963 14 C -0.147 4.147 15 C 0.050 3.950 16 O -0.416 6.416 17 C 0.080 3.920 18 C -0.063 4.063 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.147 4.147 24 H 0.250 0.750 25 H 0.318 0.682 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -7.982 0.982 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.145 3.855 10 H 0.009 0.991 11 N -0.267 5.267 12 C -0.042 4.042 13 H 0.055 0.945 14 C -0.184 4.184 15 C -0.026 4.026 16 O -0.336 6.336 17 C 0.003 3.997 18 C -0.064 4.064 19 C -0.112 4.112 20 C -0.165 4.165 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.060 0.940 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.059 -7.083 0.585 7.737 hybrid contribution 0.963 0.386 0.398 1.112 sum -2.095 -6.696 0.983 7.085 Atomic orbital electron populations 1.70144 1.05708 1.25120 1.45499 1.25166 0.95146 0.99603 0.94268 0.86319 0.79411 0.82658 0.77633 1.21010 1.21169 1.20493 1.20873 0.92457 0.91680 1.52497 0.94644 1.18107 0.88061 0.93657 0.85716 0.99104 1.60651 1.09831 1.53381 1.02818 1.22855 0.95971 0.93188 0.92225 0.94478 1.23411 0.98270 1.02128 0.94631 1.23494 0.96224 0.85866 0.97026 1.88318 1.75832 1.40069 1.29405 1.22902 0.97224 0.99230 0.80395 1.20489 0.93755 0.95096 0.97039 1.21400 0.95897 0.96453 0.97481 1.21406 1.00438 1.01169 0.93451 1.21232 0.94931 1.01020 0.99234 1.21190 0.96363 1.01516 0.96300 1.21089 0.99538 1.02302 0.93617 0.94028 0.86334 0.88099 0.90357 0.88230 0.91188 0.92311 0.93837 0.84956 0.85813 0.84525 0.84672 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.52 9.54 21.45 0.20 -43.32 16 2 C 0.07 3.41 5.21 84.65 0.44 3.85 16 3 Si 0.91 43.14 29.55 68.60 2.03 45.16 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.54 -28.22 8.00 25.60 0.20 -28.02 16 8 H 0.04 1.93 7.83 -2.91 -0.02 1.91 16 9 C 0.25 11.82 2.47 43.42 0.11 11.92 16 10 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 11 N -0.64 -27.30 4.14 -470.73 -1.95 -29.25 16 12 C 0.07 2.64 3.28 46.18 0.15 2.79 16 13 H 0.04 1.43 7.49 -2.39 -0.02 1.41 16 14 C -0.15 -4.34 6.60 32.14 0.21 -4.13 16 15 C 0.05 1.44 7.78 72.74 0.57 2.00 16 16 O -0.42 -16.23 11.36 -148.98 -1.69 -17.92 16 17 C 0.08 3.42 6.75 72.45 0.49 3.91 16 18 C -0.06 -2.77 4.65 -19.86 -0.09 -2.87 16 19 C -0.09 -4.02 7.62 22.27 0.17 -3.85 16 20 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 21 C -0.15 -4.80 10.05 22.27 0.22 -4.58 16 22 C -0.14 -4.61 10.05 22.27 0.22 -4.39 16 23 C -0.15 -5.86 9.71 22.27 0.22 -5.65 16 24 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 25 H 0.32 12.83 7.21 -89.69 -0.65 12.18 16 26 H 0.10 2.38 8.14 -2.38 -0.02 2.37 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 2.96 8.02 -2.39 -0.02 2.94 16 31 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.13 6.16 5.77 -2.91 -0.02 6.14 16 33 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -57.39 293.12 2.14 -55.24 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.42 Total: 24.25 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.14 Total: -34.16 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.74 Total: -72.57 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.69 Total: -17.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -57.39 2.14 -55.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087786924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.431 kcal (2) G-P(sol) polarization free energy of solvation -57.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds