Wall clock time and date at job start Mon Mar 30 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86790 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47347 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.47011 * 30.00052 * 3 2 1 6 6 H 1.48504 * 109.47368 * 149.99873 * 3 2 1 7 7 C 1.38630 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99773 * 179.72691 * 7 2 1 9 9 O 1.34811 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.35795 * 117.00069 * 174.66583 * 9 7 2 11 11 C 1.38893 * 119.99445 * 185.26193 * 10 9 7 12 12 C 1.38015 * 120.00352 * 179.76879 * 11 10 9 13 13 C 1.38950 * 119.99575 * 0.49267 * 12 11 10 14 14 N 1.39777 * 120.00648 * 179.74706 * 13 12 11 15 15 C 1.46851 * 111.00138 * 124.23200 * 14 13 12 16 16 C 1.53041 * 109.52318 * 174.15814 * 15 14 13 17 17 C 1.53119 * 109.27666 * 59.17505 * 16 15 14 18 18 C 1.53116 * 109.16540 * 302.34784 * 17 16 15 19 19 C 1.46851 * 111.00215 * 0.02562 * 14 13 12 20 20 C 1.38957 * 119.98469 * 359.76255 * 13 12 11 21 21 C 1.38013 * 119.99282 * 0.02562 * 20 13 12 22 22 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99962 * 0.03099 * 11 10 9 24 24 H 1.08004 * 120.00034 * 180.23747 * 12 11 10 25 25 H 1.09000 * 109.46067 * 294.17278 * 15 14 13 26 26 H 1.09000 * 109.46284 * 54.14286 * 15 14 13 27 27 H 1.08997 * 109.50237 * 299.23781 * 16 15 14 28 28 H 1.08995 * 109.50341 * 179.11873 * 16 15 14 29 29 H 1.08999 * 109.51866 * 182.43525 * 17 16 15 30 30 H 1.09005 * 109.52226 * 62.25364 * 17 16 15 31 31 H 1.09008 * 109.49815 * 297.71207 * 18 17 16 32 32 H 1.08996 * 109.50330 * 177.59548 * 18 17 16 33 33 H 1.09001 * 109.45790 * 305.86023 * 19 14 13 34 34 H 1.08998 * 109.45965 * 65.82256 * 19 14 13 35 35 H 1.07992 * 119.99908 * 180.02562 * 20 13 12 36 36 H 1.07999 * 119.99097 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4401 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0050 9 8 1.3348 -2.3681 -0.0005 10 6 2.0698 -3.5043 -0.1136 11 6 1.4341 -4.7337 -0.2304 12 6 2.1809 -5.8882 -0.3501 13 6 3.5687 -5.8216 -0.3434 14 7 4.3253 -6.9912 -0.4592 15 6 5.2587 -6.9044 -1.5896 16 6 6.1676 -8.1357 -1.5980 17 6 5.3083 -9.3975 -1.7170 18 6 4.3124 -9.4389 -0.5547 19 6 3.4573 -8.1699 -0.5767 20 6 4.2044 -4.5920 -0.2211 21 6 3.4571 -3.4374 -0.1059 22 1 -0.4850 0.8400 0.0004 23 1 0.3554 -4.7858 -0.2318 24 1 1.6865 -6.8437 -0.4448 25 1 4.6964 -6.8617 -2.5224 26 1 5.8665 -6.0050 -1.4905 27 1 6.7403 -8.1715 -0.6713 28 1 6.8498 -8.0786 -2.4462 29 1 5.9485 -10.2789 -1.6799 30 1 4.7650 -9.3804 -2.6618 31 1 4.8561 -9.4953 0.3884 32 1 3.6693 -10.3129 -0.6576 33 1 2.7567 -8.1896 0.2580 34 1 2.9036 -8.1211 -1.5143 35 1 5.2831 -4.5399 -0.2163 36 1 3.9512 -2.4818 -0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093965268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:39 Heat of formation + Delta-G solvation = -1.592870 kcal Electronic energy + Delta-G solvation = -17526.293740 eV Core-core repulsion = 14782.826138 eV Total energy + Delta-G solvation = -2743.467603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86797 -38.34439 -36.13069 -33.08279 -32.03658 -31.30091 -29.91640 -27.62391 -25.41452 -23.90944 -23.57915 -21.27836 -20.71898 -19.62420 -17.84443 -17.39507 -16.19703 -15.14837 -14.80244 -14.49063 -14.33405 -13.94760 -13.75547 -13.57125 -13.44603 -13.18094 -12.80426 -12.53423 -11.97972 -11.65365 -11.44808 -11.29673 -11.18260 -11.00652 -10.78958 -10.72964 -10.45246 -10.37922 -10.26462 -9.31618 -9.02743 -8.50341 -8.20459 -6.75135 -6.41070 -3.98942 2.17901 2.32276 3.14598 3.15550 3.20292 3.99103 4.07714 4.57583 4.76268 4.81610 4.90168 5.12275 5.19888 5.30843 5.38516 5.48004 5.57356 5.61434 5.70984 5.72829 5.81600 5.83632 5.93287 6.04705 6.09087 6.17876 6.21501 6.31317 6.51985 6.79394 6.84277 7.01830 7.25401 7.36968 7.48814 7.60228 7.98092 8.03987 9.04703 9.76095 10.77244 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051320 B = 0.004524 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.461774 B = 6188.073045 C = 6618.800932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.181 6.181 10 C 0.137 3.863 11 C -0.171 4.171 12 C -0.119 4.119 13 C 0.009 3.991 14 N -0.480 5.480 15 C 0.056 3.944 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.118 4.118 19 C 0.053 3.947 20 C -0.086 4.086 21 C -0.212 4.212 22 H 0.269 0.731 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 -14.117 -2.855 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.085 6.085 10 C 0.084 3.916 11 C -0.191 4.191 12 C -0.140 4.140 13 C -0.087 4.087 14 N -0.198 5.198 15 C -0.070 4.070 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.075 4.075 20 C -0.106 4.106 21 C -0.232 4.232 22 H 0.079 0.921 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.168 -13.990 -2.415 16.900 hybrid contribution 0.039 0.934 -0.631 1.128 sum 9.207 -13.055 -3.047 16.263 Atomic orbital electron populations 1.70049 1.05924 1.27540 1.46527 1.25265 0.95831 0.98765 0.96710 0.85728 0.78933 0.80206 0.78656 1.19948 1.20292 1.19217 1.21297 0.91738 0.80939 1.52709 0.89188 1.83987 1.34196 1.11346 1.78981 1.19356 0.90249 0.88136 0.93857 1.20091 0.99430 0.90078 1.09515 1.20817 0.92539 0.97439 1.03196 1.18425 0.91059 0.89685 1.09527 1.59301 1.18560 1.01374 1.40589 1.22216 0.94683 0.98633 0.91500 1.21617 0.97666 0.94165 1.02114 1.21586 0.97949 0.97835 0.98545 1.21614 0.97923 0.96735 0.99267 1.22175 0.94827 0.89655 1.00813 1.20392 0.98418 0.90803 1.00979 1.21077 0.93727 0.98615 1.09814 0.92112 0.86467 0.86602 0.94651 0.90449 0.91162 0.91688 0.92031 0.92332 0.91157 0.91653 0.90263 0.94381 0.87189 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -11.03 9.48 30.88 0.29 -10.74 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.24 9.76 -0.04 0.00 -5.24 16 10 C 0.14 3.37 6.65 -39.09 -0.26 3.11 16 11 C -0.17 -3.69 9.98 -39.42 -0.39 -4.09 16 12 C -0.12 -2.21 8.81 -39.40 -0.35 -2.56 16 13 C 0.01 0.16 5.65 -83.71 -0.47 -0.32 16 14 N -0.48 -7.25 4.70 -171.08 -0.80 -8.05 16 15 C 0.06 0.73 5.26 -3.83 -0.02 0.71 16 16 C -0.12 -1.22 6.09 -26.65 -0.16 -1.38 16 17 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 18 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 19 C 0.05 0.68 4.15 -3.83 -0.02 0.66 16 20 C -0.09 -1.64 9.15 -39.40 -0.36 -2.00 16 21 C -0.21 -4.70 9.16 -39.42 -0.36 -5.06 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 24 H 0.12 1.82 5.80 -52.48 -0.30 1.52 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.02 6.70 -51.93 -0.35 0.68 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.03 6.98 -51.93 -0.36 0.66 16 34 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 35 H 0.11 1.85 7.15 -52.49 -0.38 1.47 16 36 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -30.49 289.52 -8.10 -38.59 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.88 Total: 2.88 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.52 Total: -23.36 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.49 -8.10 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.999 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds