Wall clock time and date at job start Mon Mar 30 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86790 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47347 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.47011 * 30.00052 * 3 2 1 6 6 H 1.48504 * 109.47368 * 149.99873 * 3 2 1 7 7 C 1.38630 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99773 * 179.72691 * 7 2 1 9 9 O 1.34811 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.35795 * 117.00069 * 174.66583 * 9 7 2 11 11 C 1.38893 * 119.99445 * 185.26193 * 10 9 7 12 12 C 1.38015 * 120.00352 * 179.76879 * 11 10 9 13 13 C 1.38950 * 119.99575 * 0.49267 * 12 11 10 14 14 N 1.39777 * 120.00648 * 179.74706 * 13 12 11 15 15 C 1.46851 * 111.00138 * 124.23200 * 14 13 12 16 16 C 1.53041 * 109.52318 * 174.15814 * 15 14 13 17 17 C 1.53119 * 109.27666 * 59.17505 * 16 15 14 18 18 C 1.53116 * 109.16540 * 302.34784 * 17 16 15 19 19 C 1.46851 * 111.00215 * 0.02562 * 14 13 12 20 20 C 1.38957 * 119.98469 * 359.76255 * 13 12 11 21 21 C 1.38013 * 119.99282 * 0.02562 * 20 13 12 22 22 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99962 * 0.03099 * 11 10 9 24 24 H 1.08004 * 120.00034 * 180.23747 * 12 11 10 25 25 H 1.09000 * 109.46067 * 294.17278 * 15 14 13 26 26 H 1.09000 * 109.46284 * 54.14286 * 15 14 13 27 27 H 1.08997 * 109.50237 * 299.23781 * 16 15 14 28 28 H 1.08995 * 109.50341 * 179.11873 * 16 15 14 29 29 H 1.08999 * 109.51866 * 182.43525 * 17 16 15 30 30 H 1.09005 * 109.52226 * 62.25364 * 17 16 15 31 31 H 1.09008 * 109.49815 * 297.71207 * 18 17 16 32 32 H 1.08996 * 109.50330 * 177.59548 * 18 17 16 33 33 H 1.09001 * 109.45790 * 305.86023 * 19 14 13 34 34 H 1.08998 * 109.45965 * 65.82256 * 19 14 13 35 35 H 1.07992 * 119.99908 * 180.02562 * 20 13 12 36 36 H 1.07999 * 119.99097 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4401 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0050 9 8 1.3348 -2.3681 -0.0005 10 6 2.0698 -3.5043 -0.1136 11 6 1.4341 -4.7337 -0.2304 12 6 2.1809 -5.8882 -0.3501 13 6 3.5687 -5.8216 -0.3434 14 7 4.3253 -6.9912 -0.4592 15 6 5.2587 -6.9044 -1.5896 16 6 6.1676 -8.1357 -1.5980 17 6 5.3083 -9.3975 -1.7170 18 6 4.3124 -9.4389 -0.5547 19 6 3.4573 -8.1699 -0.5767 20 6 4.2044 -4.5920 -0.2211 21 6 3.4571 -3.4374 -0.1059 22 1 -0.4850 0.8400 0.0004 23 1 0.3554 -4.7858 -0.2318 24 1 1.6865 -6.8437 -0.4448 25 1 4.6964 -6.8617 -2.5224 26 1 5.8665 -6.0050 -1.4905 27 1 6.7403 -8.1715 -0.6713 28 1 6.8498 -8.0786 -2.4462 29 1 5.9485 -10.2789 -1.6799 30 1 4.7650 -9.3804 -2.6618 31 1 4.8561 -9.4953 0.3884 32 1 3.6693 -10.3129 -0.6576 33 1 2.7567 -8.1896 0.2580 34 1 2.9036 -8.1211 -1.5143 35 1 5.2831 -4.5399 -0.2163 36 1 3.9512 -2.4818 -0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:39 Heat of formation + Delta-G solvation = -20.299147 kcal Electronic energy + Delta-G solvation = -17527.104905 eV Core-core repulsion = 14782.826138 eV Total energy + Delta-G solvation = -2744.278768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28660 -39.94549 -37.65239 -34.54423 -33.81337 -32.51625 -31.29668 -29.16529 -27.32992 -25.14316 -24.77688 -22.71475 -22.20034 -20.68734 -19.64689 -19.07409 -17.73449 -16.62707 -16.23254 -15.92829 -15.68731 -15.47272 -15.06980 -14.96557 -14.71256 -14.49945 -14.21801 -14.00140 -13.48705 -13.16950 -12.93982 -12.88202 -12.53647 -12.39853 -12.12772 -12.07579 -11.63012 -11.39261 -11.30718 -11.10123 -10.82701 -10.09097 -9.84442 -8.45625 -8.36618 -6.11609 0.51710 0.66906 1.35775 1.44835 1.53268 2.19187 2.72072 2.94824 3.18050 3.54007 3.86543 3.91802 4.05587 4.09254 4.13764 4.28810 4.42961 4.48311 4.56460 4.61061 4.67597 4.79668 4.90032 4.93110 4.97339 5.10870 5.12588 5.20659 5.24459 5.29445 5.42430 5.44985 5.51178 5.68595 5.87628 6.03766 6.23061 6.49240 6.99775 7.81645 8.78489 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051320 B = 0.004524 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.461774 B = 6188.073045 C = 6618.800932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.093 3.907 11 C -0.177 4.177 12 C -0.117 4.117 13 C 0.035 3.965 14 N -0.486 5.486 15 C 0.052 3.948 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.113 4.113 19 C 0.045 3.955 20 C -0.089 4.089 21 C -0.215 4.215 22 H 0.272 0.728 23 H 0.116 0.884 24 H 0.149 0.851 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.137 0.863 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.812 -16.299 -3.386 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.043 3.957 11 C -0.197 4.197 12 C -0.138 4.138 13 C -0.062 4.062 14 N -0.203 5.203 15 C -0.074 4.074 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.082 4.082 20 C -0.109 4.109 21 C -0.235 4.235 22 H 0.081 0.919 23 H 0.134 0.866 24 H 0.166 0.834 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.155 0.845 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.733 -16.247 -2.954 20.257 hybrid contribution -0.609 1.215 -0.491 1.445 sum 11.124 -15.032 -3.445 19.015 Atomic orbital electron populations 1.70197 1.08013 1.28700 1.49221 1.26572 0.96851 1.02693 0.95990 0.84592 0.77829 0.74609 0.79219 1.18834 1.19611 1.17641 1.21809 0.92497 0.81553 1.53028 0.88183 1.83948 1.35773 1.12463 1.81957 1.19860 0.91517 0.88032 0.96310 1.20323 0.99856 0.90226 1.09303 1.21142 0.92891 0.97641 1.02083 1.18736 0.91202 0.90701 1.05568 1.59287 1.18602 1.00706 1.41691 1.22327 0.94482 1.00335 0.90212 1.21612 0.97401 0.93062 1.02979 1.21610 0.97920 0.98121 0.98196 1.21608 0.98028 0.95820 0.99593 1.22345 0.95193 0.89781 1.00843 1.20635 0.99663 0.90183 1.00442 1.21145 0.92989 0.99633 1.09708 0.91915 0.86603 0.83352 0.95036 0.90667 0.91178 0.89826 0.90026 0.92143 0.91349 0.89631 0.90421 0.94140 0.84477 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.41 13.67 21.61 0.30 -57.11 16 2 C -0.02 -1.38 5.49 84.82 0.47 -0.92 16 3 Si 1.02 43.38 29.55 68.60 2.03 45.41 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.41 -24.43 9.48 67.91 0.64 -23.79 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.39 9.76 -23.05 -0.22 -14.62 16 10 C 0.09 4.75 6.65 22.58 0.15 4.90 16 11 C -0.18 -7.80 9.98 22.37 0.22 -7.58 16 12 C -0.12 -4.17 8.81 22.39 0.20 -3.97 16 13 C 0.03 1.18 5.65 38.22 0.22 1.40 16 14 N -0.49 -13.15 4.70 -695.18 -3.27 -16.42 16 15 C 0.05 1.20 5.26 86.33 0.45 1.66 16 16 C -0.11 -1.89 6.09 30.65 0.19 -1.70 16 17 C -0.12 -1.77 6.00 30.67 0.18 -1.59 16 18 C -0.11 -1.85 6.09 30.65 0.19 -1.66 16 19 C 0.05 1.00 4.15 86.32 0.36 1.36 16 20 C -0.09 -3.28 9.15 22.39 0.20 -3.08 16 21 C -0.22 -9.66 9.16 22.37 0.20 -9.46 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 24 H 0.15 4.28 5.80 -2.91 -0.02 4.26 16 25 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.76 6.70 -2.39 -0.02 1.75 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.75 6.98 -2.39 -0.02 1.74 16 34 H 0.04 0.90 7.73 -2.39 -0.02 0.89 16 35 H 0.14 4.27 7.15 -2.91 -0.02 4.25 16 36 H 0.12 5.55 5.63 -2.91 -0.02 5.54 16 Total: -1.00 -69.81 289.52 3.58 -66.23 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.07 Total: 20.93 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.68 Total: -44.42 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.97 Total: -73.53 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.81 3.58 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.932 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds