Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86798 * 119.99761 * 2 1 4 4 H 1.48496 * 109.47440 * 269.99948 * 3 2 1 5 5 H 1.48498 * 109.47292 * 30.00460 * 3 2 1 6 6 H 1.48505 * 109.46893 * 150.00200 * 3 2 1 7 7 C 1.38628 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99562 * 179.97438 * 7 2 1 9 9 O 1.34799 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.35801 * 116.99852 * 185.05989 * 9 7 2 11 11 C 1.38715 * 120.10271 * 354.40227 * 10 9 7 12 12 C 1.38178 * 120.00618 * 179.97438 * 11 10 9 13 13 C 1.38347 * 120.20955 * 0.02562 * 12 11 10 14 14 C 1.38197 * 120.19805 * 359.97438 * 13 12 11 15 15 C 1.38747 * 119.99768 * 0.02562 * 14 13 12 16 16 N 1.39783 * 120.10539 * 179.97438 * 15 14 13 17 17 C 1.46847 * 111.00163 * 64.20893 * 16 15 14 18 18 C 1.53034 * 109.52286 * 174.16167 * 17 16 15 19 19 C 1.53127 * 109.28051 * 59.17656 * 18 17 16 20 20 C 1.53118 * 109.16028 * 302.34499 * 19 18 17 21 21 C 1.46843 * 111.00078 * 299.99335 * 16 15 14 22 22 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99676 * 359.97438 * 11 10 9 24 24 H 1.08000 * 119.90100 * 180.27812 * 12 11 10 25 25 H 1.08000 * 119.90029 * 180.02562 * 13 12 11 26 26 H 1.08007 * 120.00206 * 180.02562 * 14 13 12 27 27 H 1.09003 * 109.45832 * 294.17238 * 17 16 15 28 28 H 1.08996 * 109.46698 * 54.14044 * 17 16 15 29 29 H 1.08996 * 109.50454 * 299.23550 * 18 17 16 30 30 H 1.08998 * 109.53615 * 179.13468 * 18 17 16 31 31 H 1.09000 * 109.52080 * 182.44327 * 19 18 17 32 32 H 1.08997 * 109.57241 * 62.28667 * 19 18 17 33 33 H 1.09002 * 109.50441 * 297.71678 * 20 19 18 34 34 H 1.08992 * 109.53599 * 177.61549 * 20 19 18 35 35 H 1.09001 * 109.46612 * 305.85822 * 21 16 15 36 36 H 1.09002 * 109.46098 * 65.83920 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0705 -3.5045 0.1078 11 6 3.4561 -3.4403 0.0942 12 6 4.2025 -4.5979 0.2040 13 6 3.5725 -5.8234 0.3272 14 6 2.1926 -5.8973 0.3417 15 6 1.4348 -4.7402 0.2320 16 7 0.0389 -4.8123 0.2459 17 6 -0.4495 -5.3119 1.5375 18 6 -1.9778 -5.2403 1.5688 19 6 -2.5471 -6.0849 0.4253 20 6 -1.9851 -5.5745 -0.9044 21 6 -0.4565 -5.6364 -0.8640 22 1 -0.4850 0.8401 0.0004 23 1 3.9515 -2.4855 -0.0022 24 1 5.2812 -4.5456 0.1978 25 1 4.1608 -6.7250 0.4131 26 1 1.7040 -6.8557 0.4384 27 1 -0.1316 -6.3461 1.6705 28 1 -0.0407 -4.7002 2.3417 29 1 -2.2961 -4.2047 1.4496 30 1 -2.3413 -5.6254 2.5215 31 1 -3.6339 -6.0019 0.4173 32 1 -2.2624 -7.1277 0.5649 33 1 -2.3035 -4.5441 -1.0625 34 1 -2.3532 -6.1981 -1.7190 35 1 -0.0529 -5.2603 -1.8040 36 1 -0.1388 -6.6690 -0.7195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = -18.967191 kcal Electronic energy + Delta-G solvation = -18195.359192 eV Core-core repulsion = 15451.138182 eV Total energy + Delta-G solvation = -2744.221010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21984 -39.49569 -37.79876 -34.52021 -34.19491 -31.74250 -30.73037 -29.77134 -27.25262 -25.26263 -23.94716 -23.27958 -22.26769 -20.54551 -19.70076 -18.89898 -17.45825 -16.44063 -16.28267 -16.03912 -15.65349 -15.34248 -15.20554 -15.01844 -14.77507 -14.28286 -14.12359 -13.90331 -13.48168 -13.21606 -12.90034 -12.55174 -12.46315 -12.41496 -12.14731 -12.13232 -11.61791 -11.45194 -11.35654 -11.04881 -10.77000 -9.62105 -9.14117 -8.89009 -8.40455 -6.07464 0.49909 0.77248 1.34797 1.44403 1.51957 2.19685 2.84228 3.01398 3.18658 3.57190 3.90791 3.98751 4.02938 4.16900 4.27714 4.31901 4.43579 4.49166 4.54294 4.61019 4.73089 4.85402 4.90376 4.94906 5.00204 5.07216 5.13728 5.18717 5.22890 5.31986 5.49697 5.60039 5.66668 5.76233 6.01318 6.16545 6.29711 6.68068 7.03094 7.91250 8.81611 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.008197 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.014384 B = 3414.973932 C = 4525.252106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.418 4.418 8 H 0.097 0.903 9 O -0.204 6.204 10 C 0.128 3.872 11 C -0.248 4.248 12 C -0.074 4.074 13 C -0.186 4.186 14 C -0.103 4.103 15 C 0.002 3.998 16 N -0.511 5.511 17 C 0.069 3.931 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.116 4.116 21 C 0.067 3.933 22 H 0.270 0.730 23 H 0.119 0.881 24 H 0.145 0.855 25 H 0.149 0.851 26 H 0.137 0.863 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -12.454 1.131 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.115 0.885 9 O -0.109 6.109 10 C 0.075 3.925 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.205 4.205 14 C -0.123 4.123 15 C -0.093 4.093 16 N -0.233 5.233 17 C -0.057 4.057 18 C -0.153 4.153 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.059 4.059 22 H 0.079 0.921 23 H 0.137 0.863 24 H 0.163 0.837 25 H 0.167 0.833 26 H 0.155 0.845 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.477 -11.797 1.051 11.854 hybrid contribution 0.642 0.549 0.017 0.845 sum 1.118 -11.248 1.068 11.354 Atomic orbital electron populations 1.70244 1.07899 1.28366 1.48522 1.26508 0.96768 1.02499 0.96055 0.84650 0.77836 0.74945 0.79152 1.18914 1.19678 1.17776 1.21844 0.92391 0.82077 1.53083 0.88546 1.84081 1.34844 1.11755 1.80207 1.19941 0.90987 0.87680 0.93886 1.21283 0.92919 1.00337 1.12198 1.21180 1.00248 0.91404 0.96374 1.21026 0.93838 0.98120 1.07476 1.21454 0.94969 0.96738 0.99131 1.18152 0.89028 0.90786 1.11346 1.59063 1.06299 1.53824 1.04104 1.22050 0.96402 0.97518 0.89731 1.21601 0.93487 1.00199 1.00062 1.21521 1.00603 0.99329 0.93162 1.21604 0.93510 1.01164 0.99060 1.22086 0.96373 0.94634 0.92815 0.92141 0.86329 0.83733 0.83307 0.84489 0.93263 0.93794 0.93980 0.89314 0.90322 0.90347 0.93893 0.89143 0.93396 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.41 13.67 21.61 0.30 -57.11 16 2 C -0.02 -1.18 5.49 84.82 0.47 -0.72 16 3 Si 1.01 44.02 29.55 68.60 2.03 46.05 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.42 -24.97 9.49 67.91 0.64 -24.33 16 8 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 9 O -0.20 -12.61 9.50 -22.99 -0.22 -12.83 16 10 C 0.13 6.57 6.67 22.69 0.15 6.72 16 11 C -0.25 -11.08 9.16 22.37 0.20 -10.88 16 12 C -0.07 -2.57 10.04 22.28 0.22 -2.35 16 13 C -0.19 -5.81 10.04 22.29 0.22 -5.58 16 14 C -0.10 -3.56 8.70 22.38 0.19 -3.37 16 15 C 0.00 0.08 4.70 38.30 0.18 0.26 16 16 N -0.51 -21.38 4.38 -694.85 -3.04 -24.42 16 17 C 0.07 2.44 5.17 86.32 0.45 2.89 16 18 C -0.12 -3.48 6.09 30.65 0.19 -3.29 16 19 C -0.11 -2.68 6.00 30.68 0.18 -2.49 16 20 C -0.12 -3.39 6.09 30.65 0.19 -3.21 16 21 C 0.07 2.31 5.12 86.33 0.44 2.76 16 22 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 23 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 24 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 25 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.14 3.88 7.13 -2.91 -0.02 3.86 16 27 H 0.05 1.47 7.55 -2.39 -0.02 1.45 16 28 H 0.04 1.75 8.11 -2.39 -0.02 1.73 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.05 1.44 7.34 -2.39 -0.02 1.43 16 Total: -1.00 -72.69 293.54 3.86 -68.83 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.06 Total: 23.08 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 3.73 Total: -43.60 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.75 Total: -81.53 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.22 Total: -12.83 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.69 3.86 -68.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.864 kcal (2) G-P(sol) polarization free energy of solvation -72.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds