Wall clock time and date at job start Mon Mar 30 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35946 * 116.99968 * 2 1 4 4 C 1.38347 * 119.85182 * 180.02562 * 3 2 1 5 5 C 1.39572 * 119.71177 * 180.02562 * 4 3 2 6 6 C 1.46686 * 133.87654 * 179.97438 * 5 4 3 7 7 C 1.34319 * 107.06179 * 179.75943 * 6 5 4 8 8 N 1.36938 * 109.92825 * 0.43653 * 7 6 5 9 9 C 1.37140 * 125.10458 * 179.81330 * 8 7 6 10 10 H 1.07996 * 119.99767 * 157.85859 * 9 8 7 11 11 C 1.38811 * 119.99863 * 338.14021 * 9 8 7 12 12 N 1.31462 * 120.00115 * 349.52756 * 11 9 8 13 13 Si 1.86796 * 119.99807 * 169.53604 * 11 9 8 14 14 H 1.48507 * 109.47092 * 89.99873 * 13 11 9 15 15 H 1.48507 * 109.47063 * 209.99291 * 13 11 9 16 16 H 1.48499 * 109.47631 * 329.99685 * 13 11 9 17 17 C 1.38248 * 109.79639 * 359.55077 * 8 7 6 18 18 C 1.39417 * 133.34882 * 180.26697 * 17 8 7 19 19 O 1.35893 * 120.04927 * 359.97146 * 18 17 8 20 20 C 1.42897 * 116.99557 * 180.02562 * 19 18 17 21 21 C 1.38381 * 119.89684 * 180.02562 * 18 17 8 22 22 H 1.08994 * 109.46957 * 300.00063 * 1 2 3 23 23 H 1.09001 * 109.46741 * 59.99885 * 1 2 3 24 24 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.14458 * 359.97438 * 4 3 2 26 26 H 1.08000 * 126.46532 * 0.02773 * 6 5 4 27 27 H 1.08005 * 125.03662 * 180.28479 * 7 6 5 28 28 H 0.97004 * 120.00321 * 180.02562 * 12 11 9 29 29 H 1.08992 * 109.47462 * 60.00061 * 20 19 18 30 30 H 1.09003 * 109.47062 * 179.97438 * 20 19 18 31 31 H 1.08999 * 109.47398 * 299.99428 * 20 19 18 32 32 H 1.08003 * 119.73229 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4279 1.2801 -0.0005 5 6 4.0585 2.5253 0.0000 6 6 5.4612 2.9546 0.0002 7 6 5.4622 4.2977 -0.0046 8 7 4.1752 4.7655 0.0020 9 6 3.8173 6.0894 0.0032 10 1 2.8382 6.3843 -0.3443 11 6 4.7155 7.0508 0.4456 12 7 5.8232 6.6858 1.0523 13 14 4.3503 8.8632 0.1789 14 1 3.5937 9.3921 1.3423 15 1 5.6263 9.6097 0.0376 16 1 3.5406 9.0288 -1.0548 17 6 3.2908 3.7029 0.0012 18 6 1.8994 3.6160 0.0014 19 8 1.1468 4.7475 0.0030 20 6 -0.2726 4.5825 0.0036 21 6 1.2858 2.3756 0.0010 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0161 0.3743 -0.0005 26 1 6.3291 2.3119 -0.0006 27 1 6.3470 4.9171 -0.0102 28 1 6.4507 7.3577 1.3618 29 1 -0.5737 4.0292 0.8931 30 1 -0.7522 5.5613 0.0054 31 1 -0.5747 4.0312 -0.8868 32 1 0.2077 2.3113 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107837980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:06 Heat of formation + Delta-G solvation = -30.361023 kcal Electronic energy + Delta-G solvation = -17830.536002 eV Core-core repulsion = 14949.987824 eV Total energy + Delta-G solvation = -2880.548178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.04209 -40.15905 -39.50815 -36.43252 -34.59352 -32.30655 -30.32020 -29.60628 -28.31537 -27.47785 -26.20575 -23.22799 -22.13626 -21.64230 -19.97209 -18.60622 -17.64780 -17.54335 -16.80818 -16.79144 -16.32635 -16.23446 -15.70327 -15.41680 -15.01517 -14.22509 -14.03202 -13.73556 -13.51262 -13.21552 -12.98935 -12.75520 -12.56263 -12.43525 -12.30791 -12.18674 -12.10594 -11.78270 -11.29536 -10.68898 -9.99436 -8.75582 -8.55619 -8.24550 -6.15786 0.41932 0.88150 1.35820 1.40167 1.52009 2.10985 2.22067 2.47178 2.56864 2.92837 3.03632 3.17800 4.04657 4.20419 4.30501 4.38633 4.44498 4.47457 4.49926 4.57240 4.67816 4.72116 4.77498 5.06220 5.16730 5.21488 5.32220 5.46096 5.55770 5.77801 5.98879 6.24887 6.47976 6.58434 6.75908 7.15653 7.55414 8.45369 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029273 B = 0.007689 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.267143 B = 3640.671243 C = 4534.160144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.287 4.287 7 C 0.061 3.939 8 N -0.295 5.295 9 C -0.358 4.358 10 H 0.107 0.893 11 C -0.003 4.003 12 N -0.884 5.884 13 Si 1.011 2.989 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.260 1.260 17 C -0.037 4.037 18 C 0.165 3.835 19 O -0.334 6.334 20 C 0.018 3.982 21 C -0.297 4.297 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.284 0.716 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -4.691 -1.894 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.192 4.192 5 C -0.084 4.084 6 C -0.312 4.312 7 C -0.076 4.076 8 N 0.041 4.959 9 C -0.485 4.485 10 H 0.125 0.875 11 C -0.207 4.207 12 N -0.517 5.517 13 Si 0.831 3.169 14 H -0.192 1.192 15 H -0.191 1.191 16 H -0.184 1.184 17 C -0.146 4.146 18 C 0.118 3.882 19 O -0.247 6.247 20 C -0.076 4.076 21 C -0.317 4.317 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.141 0.859 25 H 0.147 0.853 26 H 0.169 0.831 27 H 0.180 0.820 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.228 -4.202 -1.787 11.201 hybrid contribution -0.141 0.833 0.139 0.856 sum -10.369 -3.369 -1.648 11.027 Atomic orbital electron populations 1.23259 0.77168 1.05255 1.01687 1.85989 1.22928 1.26142 1.89688 1.18185 0.91233 0.83806 0.99672 1.19442 0.91437 0.95854 1.12441 1.18785 0.93404 0.90889 1.05311 1.21500 0.94247 0.93560 1.21887 1.22125 0.88131 0.94060 1.03282 1.40318 1.03827 1.04251 1.47471 1.20276 1.03506 0.80242 1.44462 0.87499 1.26513 0.95038 1.05951 0.93243 1.69998 1.11069 1.37203 1.33395 0.84688 0.78541 0.74256 0.79393 1.19170 1.19080 1.18351 1.18290 0.89763 0.89108 1.17458 1.17956 0.87081 0.86146 0.97054 1.86177 1.20505 1.29551 1.88496 1.23321 0.77147 1.05070 1.02110 1.20820 1.00571 0.89804 1.20541 0.92448 0.92309 0.85945 0.85274 0.83065 0.81986 0.90576 0.91823 0.86593 0.91543 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -10.89 10.49 -92.94 -0.98 -11.87 16 3 C 0.12 4.58 6.68 22.49 0.15 4.73 16 4 C -0.17 -7.48 10.04 22.62 0.23 -7.26 16 5 C -0.08 -3.85 6.37 -20.18 -0.13 -3.97 16 6 C -0.29 -14.21 11.09 23.58 0.26 -13.94 16 7 C 0.06 3.32 9.88 83.00 0.82 4.14 16 8 N -0.30 -16.75 2.91 -342.62 -1.00 -17.75 16 9 C -0.36 -20.00 9.62 84.00 0.81 -19.20 16 10 H 0.11 5.88 6.66 -2.91 -0.02 5.87 16 11 C 0.00 -0.16 5.35 84.89 0.45 0.29 16 12 N -0.88 -47.65 10.87 21.64 0.24 -47.41 16 13 Si 1.01 40.23 29.56 68.60 2.03 42.26 16 14 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 15 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 C -0.04 -1.97 6.76 38.99 0.26 -1.71 16 18 C 0.16 7.54 6.70 22.59 0.15 7.69 16 19 O -0.33 -14.12 8.89 -92.35 -0.82 -14.94 16 20 C 0.02 0.48 9.81 113.37 1.11 1.59 16 21 C -0.30 -11.25 8.02 22.50 0.18 -11.07 16 22 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 23 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 24 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.15 6.41 8.06 -2.91 -0.02 6.38 16 27 H 0.16 8.82 6.38 -2.91 -0.02 8.80 16 28 H 0.28 14.02 8.31 -92.71 -0.77 13.24 16 29 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 30 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 32 H 0.16 4.62 4.46 -2.91 -0.01 4.60 16 Total: -1.00 -67.60 272.99 6.02 -61.58 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 1.14 Total: 25.29 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 5.41 Total: -37.16 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -0.76 Total: -65.16 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.80 Total: -26.81 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -67.60 6.02 -61.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107837980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.214 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds