Wall clock time and date at job start Mon Mar 30 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86807 * 119.99775 * 2 1 4 4 H 1.48492 * 109.46759 * 239.99857 * 3 2 1 5 5 H 1.48498 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46932 * 119.99950 * 3 2 1 7 7 C 1.38651 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99719 * 185.05658 * 9 7 2 11 11 C 1.38877 * 120.07219 * 354.46924 * 10 9 7 12 12 C 1.38094 * 119.93065 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.06979 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92990 * 179.97438 * 13 12 11 15 15 C 1.53118 * 109.52322 * 120.13190 * 14 13 12 16 16 C 1.53169 * 109.20909 * 177.56429 * 15 14 13 17 17 N 1.46850 * 109.55334 * 300.85660 * 16 15 14 18 18 C 1.46845 * 111.20059 * 61.74522 * 17 16 15 19 19 C 1.53036 * 109.52236 * 298.25747 * 18 17 16 20 20 C 1.38305 * 120.14006 * 0.25711 * 13 12 11 21 21 C 1.38099 * 120.06552 * 359.44557 * 20 13 12 22 22 H 0.96998 * 120.00239 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.03295 * 359.97438 * 11 10 9 24 24 H 1.08007 * 119.96483 * 179.97438 * 12 11 10 25 25 H 1.09000 * 109.52221 * 0.02562 * 14 13 12 26 26 H 1.09006 * 109.50179 * 297.56022 * 15 14 13 27 27 H 1.09001 * 109.50794 * 57.68011 * 15 14 13 28 28 H 1.09000 * 109.44499 * 180.83334 * 16 15 14 29 29 H 1.08995 * 109.44075 * 60.87336 * 16 15 14 30 30 H 1.00905 * 110.99772 * 185.84496 * 17 16 15 31 31 H 1.08995 * 109.46442 * 178.23849 * 18 17 16 32 32 H 1.09000 * 109.45395 * 58.26689 * 18 17 16 33 33 H 1.08998 * 109.50229 * 299.24164 * 19 18 17 34 34 H 1.08999 * 109.53909 * 179.13755 * 19 18 17 35 35 H 1.08000 * 119.96330 * 179.70168 * 20 13 12 36 36 H 1.08001 * 120.03265 * 180.27299 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0953 12 6 4.2024 -4.5970 0.2040 13 6 3.5686 -5.8203 0.3245 14 6 4.3849 -7.0816 0.4423 15 6 4.0585 -7.7807 1.7649 16 6 4.8459 -9.0917 1.8497 17 7 4.4877 -9.9544 0.7166 18 6 4.8352 -9.3225 -0.5626 19 6 4.0478 -8.0198 -0.7201 20 6 2.1873 -5.8891 0.3312 21 6 1.4366 -4.7345 0.2291 22 1 -0.4850 0.8400 -0.0004 23 1 3.9527 -2.4845 0.0000 24 1 5.2813 -4.5470 0.1941 25 1 5.4458 -6.8329 0.4142 26 1 4.3361 -7.1333 2.5968 27 1 2.9906 -7.9943 1.8098 28 1 4.6051 -9.5999 2.7834 29 1 5.9139 -8.8761 1.8184 30 1 4.9214 -10.8615 0.8015 31 1 4.5866 -9.9983 -1.3809 32 1 5.9033 -9.1060 -0.5822 33 1 2.9797 -8.2371 -0.7141 34 1 4.3169 -7.5428 -1.6625 35 1 1.6954 -6.8463 0.4206 36 1 0.3580 -4.7884 0.2389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108245996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:59 Heat of formation + Delta-G solvation = -16.061310 kcal Electronic energy + Delta-G solvation = -17393.401002 eV Core-core repulsion = 14649.306001 eV Total energy + Delta-G solvation = -2744.095001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.45139 -38.30113 -36.30370 -32.79951 -31.99012 -30.75545 -30.16165 -28.03576 -25.42824 -23.43893 -22.88964 -22.06472 -20.57639 -19.33796 -17.85131 -17.02279 -16.55564 -15.04997 -14.64433 -14.59134 -14.39247 -13.81187 -13.74048 -13.64140 -13.27244 -13.04779 -12.71193 -12.31312 -12.23649 -11.68223 -11.55409 -11.29851 -11.15748 -10.89763 -10.87553 -10.48711 -10.30285 -10.20647 -9.98320 -9.29555 -8.78861 -8.56540 -8.13893 -7.10954 -6.42367 -4.01339 2.25315 2.36656 3.14199 3.15313 3.18097 3.98685 4.12855 4.55457 4.88201 4.95988 5.02559 5.14152 5.23989 5.33924 5.40875 5.45838 5.54697 5.68674 5.79732 5.82238 5.83176 6.00727 6.05786 6.15576 6.25143 6.35219 6.38233 6.60370 6.76071 6.93552 6.95685 7.10276 7.25567 7.29797 7.44506 7.48209 7.87198 8.02678 9.03238 9.74335 10.75775 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055760 B = 0.004259 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.035746 B = 6573.125998 C = 6740.703373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.151 3.849 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.175 4.175 14 C -0.030 4.030 15 C -0.109 4.109 16 C 0.058 3.942 17 N -0.691 5.691 18 C 0.058 3.942 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.191 4.191 22 H 0.270 0.730 23 H 0.125 0.875 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.338 0.662 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -14.433 1.136 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.098 3.902 11 C -0.252 4.252 12 C -0.088 4.088 13 C -0.175 4.175 14 C -0.048 4.048 15 C -0.147 4.147 16 C -0.072 4.072 17 N -0.322 5.322 18 C -0.071 4.071 19 C -0.147 4.147 20 C -0.085 4.085 21 C -0.211 4.211 22 H 0.080 0.920 23 H 0.143 0.857 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.599 -13.982 1.093 16.451 hybrid contribution 1.521 0.803 -0.005 1.720 sum 10.120 -13.180 1.089 16.652 Atomic orbital electron populations 1.70031 1.05941 1.27714 1.46230 1.25275 0.95826 0.98780 0.96613 0.85795 0.78700 0.79862 0.79149 1.19541 1.20280 1.19530 1.21270 0.91742 0.80912 1.52936 0.89199 1.83981 1.34290 1.11421 1.78618 1.19396 0.90293 0.88072 0.92450 1.21133 0.93825 0.98820 1.11464 1.20621 0.98100 0.91868 0.98216 1.19193 0.93517 0.93510 1.11313 1.19899 0.98086 0.92499 0.94359 1.21707 1.01057 0.94439 0.97503 1.21984 0.97045 0.94578 0.93557 1.60269 1.64115 1.05639 1.02147 1.21959 0.97106 0.96616 0.91467 1.21683 1.01044 0.93685 0.98298 1.20455 0.92992 0.96580 0.98508 1.20219 0.99518 0.90369 1.10945 0.92010 0.85701 0.87815 0.91961 0.91605 0.90983 0.91090 0.95548 0.84528 0.91090 0.95550 0.90981 0.91628 0.87117 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 8 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 9 O -0.18 -5.21 9.76 0.03 0.00 -5.21 16 10 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 12 C -0.07 -1.30 9.66 -39.61 -0.38 -1.68 16 13 C -0.17 -2.99 4.79 -104.57 -0.50 -3.49 16 14 C -0.03 -0.41 2.42 -91.64 -0.22 -0.63 16 15 C -0.11 -1.37 5.24 -26.58 -0.14 -1.51 16 16 C 0.06 0.60 6.55 -3.76 -0.02 0.57 16 17 N -0.69 -7.05 6.85 -113.75 -0.78 -7.83 16 18 C 0.06 0.60 6.55 -3.84 -0.03 0.57 16 19 C -0.11 -1.36 5.22 -26.65 -0.14 -1.50 16 20 C -0.07 -1.22 8.66 -39.61 -0.34 -1.56 16 21 C -0.19 -4.12 9.99 -39.39 -0.39 -4.52 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 24 H 0.10 1.66 7.94 -52.48 -0.42 1.25 16 25 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.97 7.32 -51.93 -0.38 0.59 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.34 2.71 8.90 -39.29 -0.35 2.36 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.96 7.29 -51.93 -0.38 0.59 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 1.75 7.05 -52.49 -0.37 1.38 16 36 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 293.48 15.07 4.42 4.42 Total: -1.00 -30.43 293.48 -8.18 -38.61 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.97 Total: 4.81 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -2.60 Total: -25.63 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: -0.02 Total: -32.67 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.43 -8.18 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108245996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.549 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds