Wall clock time and date at job start Mon Mar 30 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86807 * 119.99775 * 2 1 4 4 H 1.48492 * 109.46759 * 239.99857 * 3 2 1 5 5 H 1.48498 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46932 * 119.99950 * 3 2 1 7 7 C 1.38651 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99719 * 185.05658 * 9 7 2 11 11 C 1.38877 * 120.07219 * 354.46924 * 10 9 7 12 12 C 1.38094 * 119.93065 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.06979 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92990 * 179.97438 * 13 12 11 15 15 C 1.53118 * 109.52322 * 120.13190 * 14 13 12 16 16 C 1.53169 * 109.20909 * 177.56429 * 15 14 13 17 17 N 1.46850 * 109.55334 * 300.85660 * 16 15 14 18 18 C 1.46845 * 111.20059 * 61.74522 * 17 16 15 19 19 C 1.53036 * 109.52236 * 298.25747 * 18 17 16 20 20 C 1.38305 * 120.14006 * 0.25711 * 13 12 11 21 21 C 1.38099 * 120.06552 * 359.44557 * 20 13 12 22 22 H 0.96998 * 120.00239 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.03295 * 359.97438 * 11 10 9 24 24 H 1.08007 * 119.96483 * 179.97438 * 12 11 10 25 25 H 1.09000 * 109.52221 * 0.02562 * 14 13 12 26 26 H 1.09006 * 109.50179 * 297.56022 * 15 14 13 27 27 H 1.09001 * 109.50794 * 57.68011 * 15 14 13 28 28 H 1.09000 * 109.44499 * 180.83334 * 16 15 14 29 29 H 1.08995 * 109.44075 * 60.87336 * 16 15 14 30 30 H 1.00905 * 110.99772 * 185.84496 * 17 16 15 31 31 H 1.08995 * 109.46442 * 178.23849 * 18 17 16 32 32 H 1.09000 * 109.45395 * 58.26689 * 18 17 16 33 33 H 1.08998 * 109.50229 * 299.24164 * 19 18 17 34 34 H 1.08999 * 109.53909 * 179.13755 * 19 18 17 35 35 H 1.08000 * 119.96330 * 179.70168 * 20 13 12 36 36 H 1.08001 * 120.03265 * 180.27299 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0953 12 6 4.2024 -4.5970 0.2040 13 6 3.5686 -5.8203 0.3245 14 6 4.3849 -7.0816 0.4423 15 6 4.0585 -7.7807 1.7649 16 6 4.8459 -9.0917 1.8497 17 7 4.4877 -9.9544 0.7166 18 6 4.8352 -9.3225 -0.5626 19 6 4.0478 -8.0198 -0.7201 20 6 2.1873 -5.8891 0.3312 21 6 1.4366 -4.7345 0.2291 22 1 -0.4850 0.8400 -0.0004 23 1 3.9527 -2.4845 0.0000 24 1 5.2813 -4.5470 0.1941 25 1 5.4458 -6.8329 0.4142 26 1 4.3361 -7.1333 2.5968 27 1 2.9906 -7.9943 1.8098 28 1 4.6051 -9.5999 2.7834 29 1 5.9139 -8.8761 1.8184 30 1 4.9214 -10.8615 0.8015 31 1 4.5866 -9.9983 -1.3809 32 1 5.9033 -9.1060 -0.5822 33 1 2.9797 -8.2371 -0.7141 34 1 4.3169 -7.5428 -1.6625 35 1 1.6954 -6.8463 0.4206 36 1 0.3580 -4.7884 0.2389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108245996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:59 Heat of formation + Delta-G solvation = -35.975362 kcal Electronic energy + Delta-G solvation = -17394.264540 eV Core-core repulsion = 14649.306001 eV Total energy + Delta-G solvation = -2744.958539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97708 -39.67350 -37.84756 -34.45236 -33.55753 -31.81932 -31.63642 -29.52136 -27.40053 -24.68269 -23.77982 -23.70746 -22.03533 -20.55760 -19.62125 -18.80197 -17.55405 -16.52521 -16.38366 -15.97181 -15.52988 -15.47086 -15.31824 -14.78233 -14.40655 -14.36526 -14.31028 -13.86956 -13.49422 -13.15431 -12.92239 -12.90015 -12.48143 -12.45252 -12.15551 -12.05973 -11.62446 -11.31237 -11.23832 -11.03767 -10.74821 -9.77904 -9.31859 -8.86437 -8.46787 -6.15240 0.59243 0.71250 1.34472 1.45490 1.51076 2.18066 2.82044 3.15860 3.37970 3.52212 3.82834 3.90755 4.12318 4.16162 4.25204 4.36675 4.41152 4.56746 4.58866 4.66660 4.75645 4.80364 4.89976 4.99114 5.08321 5.08565 5.16123 5.20866 5.33774 5.34580 5.49295 5.62114 5.71983 5.87970 6.03047 6.14381 6.23949 6.60195 6.97653 7.79206 8.76448 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055760 B = 0.004259 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.035746 B = 6573.125998 C = 6740.703373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.108 3.892 11 C -0.241 4.241 12 C -0.070 4.070 13 C -0.148 4.148 14 C -0.029 4.029 15 C -0.109 4.109 16 C 0.062 3.938 17 N -0.699 5.699 18 C 0.062 3.938 19 C -0.109 4.109 20 C -0.060 4.060 21 C -0.203 4.203 22 H 0.273 0.727 23 H 0.118 0.882 24 H 0.139 0.861 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.353 0.647 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.510 -16.496 1.389 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.058 3.942 11 C -0.260 4.260 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.047 4.047 15 C -0.147 4.147 16 C -0.067 4.067 17 N -0.332 5.332 18 C -0.067 4.067 19 C -0.147 4.147 20 C -0.078 4.078 21 C -0.222 4.222 22 H 0.082 0.918 23 H 0.136 0.864 24 H 0.157 0.843 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.172 0.828 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.453 -16.116 1.349 19.817 hybrid contribution 0.745 1.079 -0.061 1.313 sum 12.198 -15.037 1.288 19.405 Atomic orbital electron populations 1.70183 1.08052 1.28861 1.48927 1.26602 0.96853 1.02746 0.95837 0.84649 0.77397 0.74233 0.79931 1.18126 1.19560 1.18164 1.21792 0.92512 0.81526 1.53361 0.88181 1.83943 1.35931 1.12577 1.81655 1.19930 0.91663 0.87938 0.94634 1.21247 0.93045 1.00027 1.11656 1.21001 0.99751 0.91003 0.97036 1.19733 0.93479 0.94844 1.06761 1.19990 0.98038 0.90849 0.95833 1.21684 1.00888 0.95698 0.96471 1.21923 0.97043 0.93464 0.94289 1.60226 1.64661 1.06389 1.01934 1.21901 0.97114 0.95617 0.92085 1.21661 1.00879 0.94677 0.97514 1.20766 0.93580 0.96433 0.97021 1.20457 0.99847 0.90670 1.11235 0.91835 0.86404 0.84348 0.90578 0.91767 0.92011 0.89804 0.94656 0.82836 0.89783 0.94659 0.91992 0.91742 0.84279 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.50 13.67 21.61 0.30 -57.21 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 3 Si 1.02 43.36 29.55 68.60 2.03 45.38 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.42 -24.73 9.49 67.92 0.64 -24.09 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.47 9.76 -22.82 -0.22 -14.70 16 10 C 0.11 5.56 6.65 22.58 0.15 5.71 16 11 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 12 C -0.07 -2.47 9.66 22.25 0.21 -2.25 16 13 C -0.15 -4.70 4.79 -19.83 -0.10 -4.79 16 14 C -0.03 -0.68 2.42 -11.46 -0.03 -0.70 16 15 C -0.11 -2.37 5.24 30.69 0.16 -2.21 16 16 C 0.06 1.04 6.55 86.37 0.57 1.60 16 17 N -0.70 -11.46 6.85 -513.78 -3.52 -14.97 16 18 C 0.06 1.03 6.55 86.33 0.57 1.60 16 19 C -0.11 -2.35 5.22 30.65 0.16 -2.19 16 20 C -0.06 -2.10 8.66 22.25 0.19 -1.91 16 21 C -0.20 -8.97 9.99 22.39 0.22 -8.75 16 22 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 23 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 24 H 0.14 3.92 7.94 -2.91 -0.02 3.90 16 25 H 0.08 1.67 7.87 -2.39 -0.02 1.65 16 26 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.06 1.47 7.32 -2.39 -0.02 1.45 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.35 4.21 8.90 -89.69 -0.80 3.41 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 1.47 7.29 -2.39 -0.02 1.45 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.14 4.09 7.05 -2.91 -0.02 4.07 16 36 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -70.08 293.48 2.29 -67.79 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.28 Total: 23.09 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 3.43 Total: -49.39 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -3.22 Total: -72.18 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.22 Total: -14.70 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -70.08 2.29 -67.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108245996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.812 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds