Wall clock time and date at job start Mon Mar 30 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36813 * 125.06974 * 264.69816 * 12 11 10 14 14 C 1.34242 * 109.93048 * 179.81231 * 13 12 11 15 15 C 1.46495 * 107.00837 * 0.43205 * 14 13 12 16 16 C 1.39671 * 133.96929 * 179.71010 * 15 14 13 17 17 C 1.37783 * 119.63050 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.83654 * 179.97438 * 17 16 15 19 19 C 1.39041 * 120.33053 * 359.97438 * 17 16 15 20 20 C 1.37709 * 120.64970 * 0.04391 * 19 17 16 21 21 C 1.37813 * 125.06434 * 84.99851 * 12 11 10 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08001 * 125.03105 * 359.97437 * 13 12 11 30 30 H 1.07996 * 126.49453 * 180.15565 * 14 13 12 31 31 H 1.08008 * 120.18287 * 0.05289 * 16 15 14 32 32 H 1.07999 * 119.67498 * 180.02562 * 19 17 16 33 33 H 1.07996 * 120.02647 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0398 -4.0179 -0.0014 13 6 6.3993 -4.7249 1.1133 14 6 6.7969 -5.9587 0.7641 15 6 6.6926 -6.0458 -0.6945 16 6 6.9615 -7.0496 -1.6277 17 6 6.7522 -6.8076 -2.9679 18 9 7.0114 -7.7754 -3.8742 19 6 6.2754 -5.5723 -3.3923 20 6 6.0065 -4.5736 -2.4831 21 6 6.2110 -4.7967 -1.1254 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.9148 -2.1229 -0.8909 28 1 5.9148 -2.1228 0.8890 29 1 6.3656 -4.3473 2.1246 30 1 7.1344 -6.7377 1.4316 31 1 7.3310 -8.0103 -1.3006 32 1 6.1148 -5.3942 -4.4453 33 1 5.6369 -3.6177 -2.8239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111683911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:29 Heat of formation + Delta-G solvation = 0.726476 kcal Electronic energy + Delta-G solvation = -16765.137292 eV Core-core repulsion = 13898.309958 eV Total energy + Delta-G solvation = -2866.827333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.72341 -41.24664 -36.86690 -34.79850 -32.76046 -31.38718 -29.54077 -28.83359 -26.76181 -23.53025 -22.76770 -21.55723 -20.46029 -20.10006 -17.41628 -17.17735 -16.61422 -16.26834 -15.49278 -15.00955 -14.65983 -14.52756 -14.25515 -13.76232 -13.20389 -13.02920 -12.76344 -12.65894 -12.52388 -12.29718 -11.82624 -11.41743 -10.99561 -10.93623 -10.81962 -10.16788 -10.06053 -9.87480 -9.56737 -9.32670 -8.63865 -8.10672 -7.57420 -6.13317 -4.12952 1.01749 1.46759 2.74076 2.92633 3.22638 3.30676 3.31739 3.76473 4.33160 4.35528 4.62143 4.82573 4.91197 4.98671 5.19956 5.26827 5.39889 5.45585 5.57871 5.63496 5.73015 5.93749 5.99762 6.18262 6.24486 6.27597 6.33008 6.63680 6.73874 6.82288 7.09217 7.18439 7.27051 7.36305 7.66702 8.43098 8.91039 9.47720 11.00055 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.004580 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.713180 B = 6112.061561 C = 6534.942173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.118 4.118 11 C 0.101 3.899 12 N -0.473 5.473 13 C 0.068 3.932 14 C -0.218 4.218 15 C -0.088 4.088 16 C -0.111 4.111 17 C 0.064 3.936 18 F -0.147 7.147 19 C -0.137 4.137 20 C -0.090 4.090 21 C 0.090 3.910 22 H 0.264 0.736 23 H 0.018 0.982 24 H 0.013 0.987 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 -9.635 -1.278 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.156 4.156 11 C -0.019 4.019 12 N -0.154 5.154 13 C -0.059 4.059 14 C -0.243 4.243 15 C -0.093 4.093 16 C -0.130 4.130 17 C 0.043 3.957 18 F -0.126 7.126 19 C -0.157 4.157 20 C -0.111 4.111 21 C -0.017 4.017 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.187 0.813 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.422 -9.195 -1.275 18.001 hybrid contribution 0.249 0.801 -0.117 0.847 sum 15.671 -8.394 -1.392 17.832 Atomic orbital electron populations 1.69910 1.06336 1.27021 1.50645 1.25036 0.94744 0.99185 0.94430 0.86772 0.80277 0.83609 0.78558 1.20213 1.21263 1.19074 1.21066 0.89188 0.94587 1.51371 0.91013 1.19518 0.97623 0.91207 0.96448 1.21887 0.90426 1.00861 1.02408 1.22209 0.97468 0.78467 1.03798 1.44351 1.53929 1.12761 1.04325 1.21928 1.00014 0.92268 0.91645 1.21558 1.12624 0.97692 0.92382 1.18920 1.03712 0.92874 0.93777 1.20312 1.02872 0.99476 0.90350 1.17277 1.05330 0.86765 0.86291 1.91455 1.92363 1.62110 1.66681 1.20707 1.02816 0.91923 1.00302 1.19937 1.02031 0.99951 0.89161 1.18286 1.03133 0.91526 0.88708 0.92598 0.96397 0.96839 0.91972 0.92035 0.89892 0.89328 0.81339 0.83601 0.85114 0.84681 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.15 5.48 -26.73 -0.15 -2.30 16 11 C 0.10 1.44 6.00 -4.04 -0.02 1.42 16 12 N -0.47 -6.69 2.78 -114.42 -0.32 -7.01 16 13 C 0.07 0.84 11.27 -16.74 -0.19 0.65 16 14 C -0.22 -2.68 11.08 -37.67 -0.42 -3.09 16 15 C -0.09 -1.23 6.37 -105.13 -0.67 -1.90 16 16 C -0.11 -1.45 10.07 -39.21 -0.40 -1.84 16 17 C 0.06 0.85 7.29 -39.45 -0.29 0.57 16 18 F -0.15 -1.98 17.26 2.25 0.04 -1.94 16 19 C -0.14 -1.76 9.99 -39.48 -0.39 -2.16 16 20 C -0.09 -1.24 9.98 -39.46 -0.39 -1.63 16 21 C 0.09 1.33 6.81 -83.95 -0.57 0.76 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -30.76 289.63 -8.00 -38.76 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.16 Total: -0.97 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -4.03 Total: -22.89 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.46 Total: -33.58 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.76 -8.00 -38.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111683911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.483 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds