Wall clock time and date at job start Mon Mar 30 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36813 * 125.06974 * 264.69816 * 12 11 10 14 14 C 1.34242 * 109.93048 * 179.81231 * 13 12 11 15 15 C 1.46495 * 107.00837 * 0.43205 * 14 13 12 16 16 C 1.39671 * 133.96929 * 179.71010 * 15 14 13 17 17 C 1.37783 * 119.63050 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.83654 * 179.97438 * 17 16 15 19 19 C 1.39041 * 120.33053 * 359.97438 * 17 16 15 20 20 C 1.37709 * 120.64970 * 0.04391 * 19 17 16 21 21 C 1.37813 * 125.06434 * 84.99851 * 12 11 10 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08001 * 125.03105 * 359.97437 * 13 12 11 30 30 H 1.07996 * 126.49453 * 180.15565 * 14 13 12 31 31 H 1.08008 * 120.18287 * 0.05289 * 16 15 14 32 32 H 1.07999 * 119.67498 * 180.02562 * 19 17 16 33 33 H 1.07996 * 120.02647 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0398 -4.0179 -0.0014 13 6 6.3993 -4.7249 1.1133 14 6 6.7969 -5.9587 0.7641 15 6 6.6926 -6.0458 -0.6945 16 6 6.9615 -7.0496 -1.6277 17 6 6.7522 -6.8076 -2.9679 18 9 7.0114 -7.7754 -3.8742 19 6 6.2754 -5.5723 -3.3923 20 6 6.0065 -4.5736 -2.4831 21 6 6.2110 -4.7967 -1.1254 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.9148 -2.1229 -0.8909 28 1 5.9148 -2.1228 0.8890 29 1 6.3656 -4.3473 2.1246 30 1 7.1344 -6.7377 1.4316 31 1 7.3310 -8.0103 -1.3006 32 1 6.1148 -5.3942 -4.4453 33 1 5.6369 -3.6177 -2.8239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111683911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:28 Heat of formation + Delta-G solvation = -15.130273 kcal Electronic energy + Delta-G solvation = -16765.824892 eV Core-core repulsion = 13898.309958 eV Total energy + Delta-G solvation = -2867.514934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.76287 -42.24212 -37.91829 -36.30057 -34.50245 -32.79070 -30.80797 -29.81132 -28.27496 -25.00168 -23.83099 -22.64881 -22.06779 -21.13197 -19.02913 -18.34750 -17.99451 -17.26444 -16.53842 -16.35415 -15.96933 -15.91459 -15.66502 -14.86732 -14.75191 -14.20078 -14.00278 -13.86278 -13.71371 -13.48359 -13.23732 -12.96888 -12.55105 -12.23528 -11.85022 -11.81229 -11.66350 -11.58039 -11.37723 -10.77974 -10.65941 -9.11505 -8.58807 -8.30297 -6.36263 0.02621 0.42604 1.37813 1.39768 1.51246 1.77825 1.92160 2.36084 2.73864 3.05482 3.32967 3.62410 3.80614 3.97914 3.99934 4.13084 4.28246 4.40583 4.44074 4.60419 4.69415 4.77876 4.87624 4.96062 5.03018 5.03558 5.23392 5.27788 5.42277 5.49072 5.63069 5.77053 5.84037 6.22822 6.24988 6.39499 6.72654 7.28728 8.86894 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.004580 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.713180 B = 6112.061561 C = 6534.942173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.538 4.538 8 H 0.023 0.977 9 C -0.007 4.007 10 C -0.106 4.106 11 C 0.112 3.888 12 N -0.481 5.481 13 C 0.062 3.938 14 C -0.220 4.220 15 C -0.107 4.107 16 C -0.113 4.113 17 C 0.051 3.949 18 F -0.149 7.149 19 C -0.139 4.139 20 C -0.103 4.103 21 C 0.067 3.933 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.200 0.800 30 H 0.171 0.829 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.172 -8.841 -0.684 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.576 4.576 8 H 0.041 0.959 9 C -0.045 4.045 10 C -0.145 4.145 11 C -0.008 4.008 12 N -0.163 5.163 13 C -0.063 4.063 14 C -0.244 4.244 15 C -0.112 4.112 16 C -0.132 4.132 17 C 0.030 3.970 18 F -0.128 7.128 19 C -0.158 4.158 20 C -0.124 4.124 21 C -0.040 4.040 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.217 0.783 30 H 0.188 0.812 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.929 -8.435 -0.677 19.826 hybrid contribution -0.598 0.414 -0.313 0.792 sum 17.331 -8.021 -0.990 19.123 Atomic orbital electron populations 1.70090 1.08644 1.28289 1.52523 1.26115 0.95627 1.03891 0.93901 0.85579 0.79738 0.77551 0.79277 1.19188 1.21346 1.15883 1.21480 0.92421 0.92847 1.50805 0.95854 1.19453 0.93657 0.93936 0.97456 1.21662 0.93851 0.98097 1.00884 1.22021 0.93954 0.79180 1.05692 1.44379 1.54404 1.12765 1.04731 1.22513 0.99222 0.92184 0.92400 1.21935 1.12226 0.98453 0.91822 1.19273 1.04020 0.92894 0.94993 1.20550 1.02318 1.00151 0.90176 1.17452 1.05897 0.87025 0.86587 1.91446 1.92441 1.62188 1.66758 1.20933 1.02108 0.91564 1.01231 1.20108 1.02498 1.00537 0.89220 1.18612 1.03804 0.92233 0.89314 0.92492 0.94898 0.95500 0.93183 0.94067 0.88756 0.86736 0.78335 0.81155 0.83290 0.82885 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.96 42.19 27.47 68.60 1.88 44.08 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.55 16 7 C -0.54 -30.32 9.66 25.60 0.25 -30.07 16 8 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.11 -3.80 5.48 30.59 0.17 -3.64 16 11 C 0.11 2.90 6.00 86.38 0.52 3.42 16 12 N -0.48 -12.63 2.78 -515.90 -1.43 -14.07 16 13 C 0.06 1.37 11.27 83.00 0.94 2.30 16 14 C -0.22 -4.90 11.08 23.51 0.26 -4.64 16 15 C -0.11 -2.85 6.37 -20.20 -0.13 -2.98 16 16 C -0.11 -2.82 10.07 22.51 0.23 -2.59 16 17 C 0.05 1.32 7.29 22.35 0.16 1.48 16 18 F -0.15 -3.90 17.26 44.97 0.78 -3.12 16 19 C -0.14 -3.45 9.99 22.34 0.22 -3.22 16 20 C -0.10 -2.75 9.98 22.35 0.22 -2.53 16 21 C 0.07 1.90 6.81 38.99 0.27 2.17 16 22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 23 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 24 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.11 2.40 8.12 -2.39 -0.02 2.38 16 29 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -68.08 289.63 6.25 -61.83 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.04 Total: 10.55 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 3.69 Total: -39.95 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.14 Total: -73.38 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Total: -68.08 6.25 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111683911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.702 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds