Wall clock time and date at job start Mon Mar 30 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99868 * 2 1 4 4 H 1.48504 * 109.46981 * 270.00026 * 3 2 1 5 5 H 1.48501 * 109.47259 * 30.00129 * 3 2 1 6 6 H 1.48502 * 109.46856 * 150.00270 * 3 2 1 7 7 C 1.37881 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99180 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00384 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46933 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.37065 * 124.73592 * 270.01460 * 11 10 9 13 13 C 1.32899 * 108.75450 * 179.97438 * 12 11 10 14 14 C 1.47161 * 106.81578 * 359.52064 * 13 12 11 15 15 C 1.35028 * 124.74686 * 89.96777 * 11 10 9 16 16 C 1.47029 * 123.84585 * 181.74819 * 14 13 12 17 17 O 1.21344 * 122.18215 * 239.54657 * 16 14 13 18 18 C 1.52345 * 115.63455 * 59.52526 * 16 14 13 19 19 C 1.50236 * 110.14853 * 285.92197 * 18 16 14 20 20 C 1.50749 * 117.12585 * 70.26579 * 19 18 16 21 21 C 1.52069 * 130.00470 * 179.22677 * 13 12 11 22 22 H 0.97002 * 120.00400 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47265 * 60.00299 * 9 7 2 24 24 H 1.09006 * 109.47283 * 300.00077 * 9 7 2 25 25 H 1.08994 * 109.47586 * 60.00082 * 10 9 7 26 26 H 1.09001 * 109.46684 * 299.99598 * 10 9 7 27 27 H 1.08000 * 125.62532 * 0.03829 * 12 11 10 28 28 H 1.07997 * 126.08266 * 0.53707 * 15 11 10 29 29 H 1.09000 * 109.35450 * 165.71652 * 18 16 14 30 30 H 1.08995 * 109.36249 * 46.13288 * 18 16 14 31 31 H 1.09005 * 107.91466 * 192.19517 * 19 18 16 32 32 H 1.08999 * 107.91528 * 308.33056 * 19 18 16 33 33 H 1.09002 * 108.97737 * 41.09962 * 20 19 18 34 34 H 1.08993 * 108.97628 * 159.81009 * 20 19 18 35 35 H 1.08999 * 109.97901 * 359.60535 * 21 13 12 36 36 H 1.09001 * 110.06070 * 238.29974 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 1.1216 -5.6074 1.1249 13 6 0.4825 -6.7135 0.7585 14 6 0.4621 -6.7258 -0.7130 15 6 1.1278 -5.5967 -1.1110 16 6 -0.1896 -7.7722 -1.5142 17 8 0.4237 -8.4533 -2.3094 18 6 -1.6850 -7.9459 -1.2805 19 6 -1.9272 -8.6276 0.0362 20 6 -1.6320 -7.8360 1.2846 21 6 -0.1348 -7.8130 1.6085 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6043 -0.8906 27 1 1.3020 -5.2929 2.1422 28 1 1.3120 -5.2931 -2.1309 29 1 -2.1083 -8.5496 -2.0832 30 1 -2.1658 -6.9678 -1.2748 31 1 -2.9742 -8.9291 0.0700 32 1 -1.3206 -9.5328 0.0617 33 1 -1.9804 -6.8125 1.1461 34 1 -2.1691 -8.2813 2.1220 35 1 0.0143 -7.5943 2.6659 36 1 0.3148 -8.7745 1.3603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135386174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:25 Heat of formation + Delta-G solvation = -14.711645 kcal Electronic energy + Delta-G solvation = -17490.968286 eV Core-core repulsion = 14746.931811 eV Total energy + Delta-G solvation = -2744.036475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90800 -38.66190 -36.11109 -34.01212 -32.22715 -31.12612 -29.08842 -28.16437 -25.81232 -23.88938 -22.71648 -21.36405 -20.10423 -19.36924 -18.22481 -17.02348 -16.23626 -15.53284 -14.75880 -14.66288 -14.50154 -14.13010 -14.02415 -13.47236 -13.15372 -13.10262 -12.91833 -12.66649 -12.26419 -11.69799 -11.50704 -11.34967 -11.09355 -10.87648 -10.73282 -10.66064 -10.58712 -10.23504 -9.88695 -9.45188 -9.34857 -8.54752 -7.89026 -7.84311 -6.18713 -4.24631 2.00548 2.79660 3.13259 3.21510 3.28191 3.30371 3.48364 4.31731 4.44052 4.76096 4.99946 5.05018 5.17587 5.23577 5.33544 5.42821 5.55220 5.60213 5.65300 5.80510 5.85792 5.99927 6.04463 6.06683 6.09017 6.18383 6.29724 6.42368 6.44525 6.59585 7.19895 7.37436 7.38371 7.67011 7.69136 7.81404 7.86895 8.13436 8.81242 9.41229 10.92247 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.004625 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.487459 B = 6052.141944 C = 6166.470661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.100 3.900 11 N -0.433 5.433 12 C 0.005 3.995 13 C -0.149 4.149 14 C -0.282 4.282 15 C 0.069 3.931 16 C 0.448 3.552 17 O -0.469 6.469 18 C -0.156 4.156 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.044 4.044 22 H 0.264 0.736 23 H 0.023 0.977 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -13.592 2.310 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.020 4.020 11 N -0.105 5.105 12 C -0.123 4.123 13 C -0.154 4.154 14 C -0.291 4.291 15 C -0.067 4.067 16 C 0.325 3.675 17 O -0.343 6.343 18 C -0.195 4.195 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.082 4.082 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.177 0.823 28 H 0.181 0.819 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.112 -13.503 1.930 13.803 hybrid contribution 0.346 1.219 -0.012 1.267 sum -1.766 -12.284 1.917 12.557 Atomic orbital electron populations 1.69966 1.06157 1.27065 1.49530 1.25001 0.94868 0.99461 0.94741 0.86511 0.79777 0.82979 0.78278 1.20475 1.21048 1.19728 1.21015 0.93066 0.90400 1.52468 0.92287 1.19443 0.94024 0.90550 0.98459 1.22434 0.95791 0.80938 1.02880 1.44393 1.42319 1.18895 1.04907 1.21020 1.05317 0.94359 0.91628 1.20325 1.05835 0.97726 0.91562 1.20899 1.12820 1.00945 0.94409 1.21642 0.99537 0.93442 0.92079 1.22035 0.89858 0.78786 0.76832 1.90508 1.69515 1.42719 1.31600 1.21843 0.95120 1.03469 0.99024 1.20341 1.01827 0.99077 0.93048 1.21161 0.96132 1.01421 0.96598 1.20318 0.94172 0.95820 0.97881 0.92666 0.95855 0.95759 0.90163 0.90286 0.82250 0.81864 0.89957 0.88885 0.91674 0.92478 0.91121 0.91843 0.91123 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.10 1.89 5.94 -4.04 -0.02 1.86 16 11 N -0.43 -7.72 2.71 -117.21 -0.32 -8.03 16 12 C 0.00 0.07 11.31 -17.06 -0.19 -0.12 16 13 C -0.15 -2.29 5.44 -102.17 -0.56 -2.84 16 14 C -0.28 -4.71 5.88 -103.17 -0.61 -5.32 16 15 C 0.07 1.20 11.44 -16.60 -0.19 1.01 16 16 C 0.45 7.07 6.53 -29.93 -0.20 6.88 16 17 O -0.47 -8.66 17.98 5.50 0.10 -8.56 16 18 C -0.16 -1.90 5.81 -28.44 -0.17 -2.06 16 19 C -0.11 -1.10 5.03 -29.24 -0.15 -1.25 16 20 C -0.12 -1.25 5.49 -27.75 -0.15 -1.40 16 21 C -0.04 -0.53 6.12 -27.10 -0.17 -0.69 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 26 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 27 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 7.70 -51.93 -0.40 0.20 16 33 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 LS Contribution 302.40 15.07 4.56 4.56 Total: -1.00 -30.26 302.40 -8.30 -38.56 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.40 Total: -0.67 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.95 Total: -16.52 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.42 Total: -33.00 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.10 Total: -8.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.26 -8.30 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135386174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.849 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds